miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30862 3' -58 NC_006552.1 + 4414 0.7 0.343019
Target:  5'- gUGaCAGgGCCGGUGCCAcCACcauccGGCg -3'
miRNA:   3'- aACgGUCgCGGCUACGGUaGUGa----CCG- -5'
30862 3' -58 NC_006552.1 + 5079 0.66 0.571751
Target:  5'- -aGCCAGCGCUaucgcaGCCAgaacggcgcccaacUCGCgGGCg -3'
miRNA:   3'- aaCGGUCGCGGcua---CGGU--------------AGUGaCCG- -5'
30862 3' -58 NC_006552.1 + 5316 0.68 0.422203
Target:  5'- -cGCCAGuUGgUGAUGCCGa-ACUGGCc -3'
miRNA:   3'- aaCGGUC-GCgGCUACGGUagUGACCG- -5'
30862 3' -58 NC_006552.1 + 7115 0.68 0.454848
Target:  5'- cUGCUcugcGGCGCCGAacaacuugccccagGCCAUCgACaGGCg -3'
miRNA:   3'- aACGG----UCGCGGCUa-------------CGGUAG-UGaCCG- -5'
30862 3' -58 NC_006552.1 + 7230 0.68 0.441237
Target:  5'- cUGCCGcGgGCCugcGCCAUCaACUGGUg -3'
miRNA:   3'- aACGGU-CgCGGcuaCGGUAG-UGACCG- -5'
30862 3' -58 NC_006552.1 + 8672 0.71 0.275113
Target:  5'- --uUCGGCGCCaGAUcaGCCGcaUCGCUGGCg -3'
miRNA:   3'- aacGGUCGCGG-CUA--CGGU--AGUGACCG- -5'
30862 3' -58 NC_006552.1 + 10472 0.73 0.22417
Target:  5'- -aGCCAGCGCa-GUGCCGcCuuCUGGCa -3'
miRNA:   3'- aaCGGUCGCGgcUACGGUaGu-GACCG- -5'
30862 3' -58 NC_006552.1 + 12943 0.66 0.553528
Target:  5'- -gGCCAGCGCgcugGCCuuggC-CUGGCg -3'
miRNA:   3'- aaCGGUCGCGgcuaCGGua--GuGACCG- -5'
30862 3' -58 NC_006552.1 + 16796 0.74 0.191415
Target:  5'- -cGCCGGCuGCCacaGGUGCCAaCGCUGGa -3'
miRNA:   3'- aaCGGUCG-CGG---CUACGGUaGUGACCg -5'
30862 3' -58 NC_006552.1 + 17984 0.67 0.50108
Target:  5'- -aGCCAacGCGuCCGggGCCAUCGgcGGUa -3'
miRNA:   3'- aaCGGU--CGC-GGCuaCGGUAGUgaCCG- -5'
30862 3' -58 NC_006552.1 + 20957 0.67 0.521822
Target:  5'- -cGuCCGGCaCCGGgaugGCCGUCAUgcucGGCg -3'
miRNA:   3'- aaC-GGUCGcGGCUa---CGGUAGUGa---CCG- -5'
30862 3' -58 NC_006552.1 + 24735 0.68 0.412872
Target:  5'- -aGCCGGCGCCGG-GCCu--GCUcGGUc -3'
miRNA:   3'- aaCGGUCGCGGCUaCGGuagUGA-CCG- -5'
30862 3' -58 NC_006552.1 + 26710 0.67 0.521822
Target:  5'- -cGCCcagGGCGCCGAaGgCGUCGCcGuGCa -3'
miRNA:   3'- aaCGG---UCGCGGCUaCgGUAGUGaC-CG- -5'
30862 3' -58 NC_006552.1 + 27625 0.66 0.574982
Target:  5'- gUGCUgaugcGCGCCGA-GCCGaaUCGCUcacccGGCg -3'
miRNA:   3'- aACGGu----CGCGGCUaCGGU--AGUGA-----CCG- -5'
30862 3' -58 NC_006552.1 + 27868 0.68 0.450936
Target:  5'- aUGCCGGCGUCGAUGU--UCACgcccaugaUGcGCa -3'
miRNA:   3'- aACGGUCGCGGCUACGguAGUG--------AC-CG- -5'
30862 3' -58 NC_006552.1 + 27916 0.68 0.422203
Target:  5'- aUGuCCGGCGCCcgGAUGCCuGUCGCguaaGGa -3'
miRNA:   3'- aAC-GGUCGCGG--CUACGG-UAGUGa---CCg -5'
30862 3' -58 NC_006552.1 + 28153 0.68 0.412872
Target:  5'- -cGuCCGGCGCCaccgGAcGCCAUUGCaGGCg -3'
miRNA:   3'- aaC-GGUCGCGG----CUaCGGUAGUGaCCG- -5'
30862 3' -58 NC_006552.1 + 30681 0.67 0.521822
Target:  5'- aUGUCGuCGagCGAUGCCG-CACUGGUg -3'
miRNA:   3'- aACGGUcGCg-GCUACGGUaGUGACCG- -5'
30862 3' -58 NC_006552.1 + 32026 0.69 0.38566
Target:  5'- -gGCCAGCGCC-AUGUCAgcCAggGGCg -3'
miRNA:   3'- aaCGGUCGCGGcUACGGUa-GUgaCCG- -5'
30862 3' -58 NC_006552.1 + 32673 0.68 0.431659
Target:  5'- -aGCCuGCGCgaucaccugcuUGGUGUCGUCGCcGGCc -3'
miRNA:   3'- aaCGGuCGCG-----------GCUACGGUAGUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.