Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30865 | 5' | -55.7 | NC_006552.1 | + | 1973 | 0.67 | 0.649822 |
Target: 5'- -cGGACCugcaccCGaGCGACAGcGCUGGGcuGCa -3' miRNA: 3'- uaCCUGGu-----GC-CGCUGUU-CGACCU--UGa -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 2987 | 0.67 | 0.615742 |
Target: 5'- aGUGGAUUAccCGGCGACAacaccggAGCgcgcGGAGCa -3' miRNA: 3'- -UACCUGGU--GCCGCUGU-------UCGa---CCUUGa -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 13954 | 0.78 | 0.160163 |
Target: 5'- -cGGGCCACGuCGAUguAGGCUGGAACUc -3' miRNA: 3'- uaCCUGGUGCcGCUG--UUCGACCUUGA- -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 16799 | 0.66 | 0.693519 |
Target: 5'- -cGGcuGCCACaGGUGcCAAcGCUGGAGCc -3' miRNA: 3'- uaCC--UGGUG-CCGCuGUU-CGACCUUGa -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 17481 | 0.66 | 0.715057 |
Target: 5'- -aGGuACCACGGUGA--AGCgauucGGAGCg -3' miRNA: 3'- uaCC-UGGUGCCGCUguUCGa----CCUUGa -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 25292 | 0.7 | 0.452149 |
Target: 5'- gAUGGACCGgguagcggugucgguCGGCGucCAAGCUGGGc-- -3' miRNA: 3'- -UACCUGGU---------------GCCGCu-GUUCGACCUuga -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 27747 | 0.77 | 0.177135 |
Target: 5'- gAUGGugUGCGGCGugAgacgcggcuuggauGGCUGGAACa -3' miRNA: 3'- -UACCugGUGCCGCugU--------------UCGACCUUGa -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 34511 | 0.66 | 0.682657 |
Target: 5'- -cGGGCgGCGGCGGCA-GCUcGAuCUg -3' miRNA: 3'- uaCCUGgUGCCGCUGUuCGAcCUuGA- -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 42959 | 0.66 | 0.693519 |
Target: 5'- uUGGGCUuCGGCGACAccGCgauaauacGGAGCg -3' miRNA: 3'- uACCUGGuGCCGCUGUu-CGa-------CCUUGa -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 52531 | 0.73 | 0.308262 |
Target: 5'- cUGGACCACgcauGGCGACu-GgUGGAACg -3' miRNA: 3'- uACCUGGUG----CCGCUGuuCgACCUUGa -5' |
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30865 | 5' | -55.7 | NC_006552.1 | + | 59570 | 0.73 | 0.308262 |
Target: 5'- -cGGAgguugaugcCUACGGCGugGAGCUGGAcccgGCUc -3' miRNA: 3'- uaCCU---------GGUGCCGCugUUCGACCU----UGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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