miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30866 5' -53.4 NC_006552.1 + 17653 0.66 0.88168
Target:  5'- uGGCGAUCGAguUCGuuGgcggCGAGGa-- -3'
miRNA:   3'- -CCGCUAGCUguGGCggCa---GUUCUagu -5'
30866 5' -53.4 NC_006552.1 + 54569 0.66 0.88168
Target:  5'- uGGUGAUCgugGACACCGCCacggCGaaggccgccgaGGAUCu -3'
miRNA:   3'- -CCGCUAG---CUGUGGCGGca--GU-----------UCUAGu -5'
30866 5' -53.4 NC_006552.1 + 51550 0.66 0.879421
Target:  5'- aGGCGAagCGGauCACCGCCG-CAcuggugacguuggaAGAUCc -3'
miRNA:   3'- -CCGCUa-GCU--GUGGCGGCaGU--------------UCUAGu -5'
30866 5' -53.4 NC_006552.1 + 33755 0.66 0.874064
Target:  5'- cGGCGG-CGGCAUUGCUGUUGAGc--- -3'
miRNA:   3'- -CCGCUaGCUGUGGCGGCAGUUCuagu -5'
30866 5' -53.4 NC_006552.1 + 28019 0.66 0.849769
Target:  5'- cGGCGAguacggCGGCG-CGCCgGUCuuGGUCAc -3'
miRNA:   3'- -CCGCUa-----GCUGUgGCGG-CAGuuCUAGU- -5'
30866 5' -53.4 NC_006552.1 + 58679 0.67 0.832438
Target:  5'- aGCGAaggcaGACACCGCCGUUgc-AUCGg -3'
miRNA:   3'- cCGCUag---CUGUGGCGGCAGuucUAGU- -5'
30866 5' -53.4 NC_006552.1 + 31243 0.67 0.823458
Target:  5'- aGGUGA-CGAugauguCGCCGCCGUUggGGg-- -3'
miRNA:   3'- -CCGCUaGCU------GUGGCGGCAGuuCUagu -5'
30866 5' -53.4 NC_006552.1 + 47173 0.67 0.823458
Target:  5'- -----gUGACGCUGCCGUCAucguugaaagucAGAUCAa -3'
miRNA:   3'- ccgcuaGCUGUGGCGGCAGU------------UCUAGU- -5'
30866 5' -53.4 NC_006552.1 + 50224 0.67 0.81428
Target:  5'- cGGCGAUCGAgGCgGCCcg-AAGcgCAa -3'
miRNA:   3'- -CCGCUAGCUgUGgCGGcagUUCuaGU- -5'
30866 5' -53.4 NC_006552.1 + 41321 0.67 0.81428
Target:  5'- ----cUCGAUGCUGCCGUCAGGGcCGa -3'
miRNA:   3'- ccgcuAGCUGUGGCGGCAGUUCUaGU- -5'
30866 5' -53.4 NC_006552.1 + 17537 0.68 0.775791
Target:  5'- cGGCGAUCGcgGCGCgGUCuUCGGGAgCAg -3'
miRNA:   3'- -CCGCUAGC--UGUGgCGGcAGUUCUaGU- -5'
30866 5' -53.4 NC_006552.1 + 46638 0.68 0.765777
Target:  5'- cGGCGAUCcacugGAUGCCGaugaaGUCGAGAUUc -3'
miRNA:   3'- -CCGCUAG-----CUGUGGCgg---CAGUUCUAGu -5'
30866 5' -53.4 NC_006552.1 + 62500 0.69 0.734968
Target:  5'- aGGUGAUCGcCACgcuuCGCCGcCAGGGcuUCAu -3'
miRNA:   3'- -CCGCUAGCuGUG----GCGGCaGUUCU--AGU- -5'
30866 5' -53.4 NC_006552.1 + 38298 0.69 0.724481
Target:  5'- cGGCGGUcaCGGCAUCGCCuUC--GAUCAc -3'
miRNA:   3'- -CCGCUA--GCUGUGGCGGcAGuuCUAGU- -5'
30866 5' -53.4 NC_006552.1 + 51643 0.69 0.713903
Target:  5'- aGGaacgGAUCGcACGCCuGCUGUCgAAGGUCGa -3'
miRNA:   3'- -CCg---CUAGC-UGUGG-CGGCAG-UUCUAGU- -5'
30866 5' -53.4 NC_006552.1 + 21785 0.69 0.713903
Target:  5'- uGCGGUCcaaGCcugGCCGCCGUCcuGGUCGc -3'
miRNA:   3'- cCGCUAGc--UG---UGGCGGCAGuuCUAGU- -5'
30866 5' -53.4 NC_006552.1 + 47638 0.7 0.661133
Target:  5'- aGCGAgagucggcagcaaagCGugGCCgGCUGUCGGGAUCu -3'
miRNA:   3'- cCGCUa--------------GCugUGG-CGGCAGUUCUAGu -5'
30866 5' -53.4 NC_006552.1 + 28685 0.74 0.420401
Target:  5'- cGGCGG-CGccACGCCGCCuggCAAGAUCGg -3'
miRNA:   3'- -CCGCUaGC--UGUGGCGGca-GUUCUAGU- -5'
30866 5' -53.4 NC_006552.1 + 48589 0.74 0.411088
Target:  5'- uGGCGA-CGACaucaccgugACCGUCGUCGAGAaCAg -3'
miRNA:   3'- -CCGCUaGCUG---------UGGCGGCAGUUCUaGU- -5'
30866 5' -53.4 NC_006552.1 + 26956 0.76 0.357996
Target:  5'- cGGUacuGAUCGGCGuuGCCGUCAGGG-CGg -3'
miRNA:   3'- -CCG---CUAGCUGUggCGGCAGUUCUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.