miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30867 3' -59.9 NC_006552.1 + 49169 0.78 0.098013
Target:  5'- uCCGgcugCCCGCacugCGGCGGCCuGGUcCGGCu -3'
miRNA:   3'- -GGUa---GGGCGa---GCCGCCGG-UCAaGCCG- -5'
30867 3' -59.9 NC_006552.1 + 55302 0.75 0.157918
Target:  5'- cCUA-CCCGUUCaGCGGCUGGcUCGGCg -3'
miRNA:   3'- -GGUaGGGCGAGcCGCCGGUCaAGCCG- -5'
30867 3' -59.9 NC_006552.1 + 13635 0.74 0.193991
Target:  5'- aCGggCCUGCUCGGCGGCC----UGGCg -3'
miRNA:   3'- gGUa-GGGCGAGCCGCCGGucaaGCCG- -5'
30867 3' -59.9 NC_006552.1 + 50413 0.72 0.237073
Target:  5'- gCCAUCUgGgUgGGCGGCCuGaUUGGCg -3'
miRNA:   3'- -GGUAGGgCgAgCCGCCGGuCaAGCCG- -5'
30867 3' -59.9 NC_006552.1 + 11433 0.72 0.261478
Target:  5'- uUAUCCgGCUCGGCGGgCGccUCGcGCa -3'
miRNA:   3'- gGUAGGgCGAGCCGCCgGUcaAGC-CG- -5'
30867 3' -59.9 NC_006552.1 + 34605 0.71 0.273769
Target:  5'- ---cCCCGCauUCGGCGcaacGCCAGUgauggcaUCGGCg -3'
miRNA:   3'- gguaGGGCG--AGCCGC----CGGUCA-------AGCCG- -5'
30867 3' -59.9 NC_006552.1 + 44743 0.71 0.281094
Target:  5'- cCCAggcCUCGUUCGGCucgGGCCGaccgUCGGCg -3'
miRNA:   3'- -GGUa--GGGCGAGCCG---CCGGUca--AGCCG- -5'
30867 3' -59.9 NC_006552.1 + 32435 0.7 0.323791
Target:  5'- gCGUCCgUGCgaacUCGGCGGaUCAGgUCGGCc -3'
miRNA:   3'- gGUAGG-GCG----AGCCGCC-GGUCaAGCCG- -5'
30867 3' -59.9 NC_006552.1 + 39538 0.7 0.33136
Target:  5'- aCGUCgCCGUUCGGCGucacccGCCAGUcUGuGCg -3'
miRNA:   3'- gGUAG-GGCGAGCCGC------CGGUCAaGC-CG- -5'
30867 3' -59.9 NC_006552.1 + 64792 0.7 0.339058
Target:  5'- gCAUCCUGC-CGGaaacggcguuucCGGCCGGgcCGGUa -3'
miRNA:   3'- gGUAGGGCGaGCC------------GCCGGUCaaGCCG- -5'
30867 3' -59.9 NC_006552.1 + 45012 0.69 0.354842
Target:  5'- gCCAgggCCUGCUCaGCGGCggacaAGUUCGauGCg -3'
miRNA:   3'- -GGUa--GGGCGAGcCGCCGg----UCAAGC--CG- -5'
30867 3' -59.9 NC_006552.1 + 35102 0.69 0.362926
Target:  5'- -gGUgCCGCUCGGCaucuuGCCGGUcaGGCg -3'
miRNA:   3'- ggUAgGGCGAGCCGc----CGGUCAagCCG- -5'
30867 3' -59.9 NC_006552.1 + 64483 0.69 0.371136
Target:  5'- aUCAUCCgcaCGCU-GGCGGCCuGgcaGGCg -3'
miRNA:   3'- -GGUAGG---GCGAgCCGCCGGuCaagCCG- -5'
30867 3' -59.9 NC_006552.1 + 52939 0.69 0.371136
Target:  5'- aCCG-CCUGCgcCGGCGcccgccGCCGGUgCGGCa -3'
miRNA:   3'- -GGUaGGGCGa-GCCGC------CGGUCAaGCCG- -5'
30867 3' -59.9 NC_006552.1 + 25007 0.69 0.396517
Target:  5'- gCCAg-CCGCUcgacagCGGCGGCaucgUCGGCg -3'
miRNA:   3'- -GGUagGGCGA------GCCGCCGgucaAGCCG- -5'
30867 3' -59.9 NC_006552.1 + 18555 0.68 0.405223
Target:  5'- cCCGUCCCGCggagaaccgagUCGGUucGCCAGccaGGCc -3'
miRNA:   3'- -GGUAGGGCG-----------AGCCGc-CGGUCaagCCG- -5'
30867 3' -59.9 NC_006552.1 + 43202 0.68 0.405223
Target:  5'- ---gCCUGCUCGGUcuuguucaucuGGCCGGUUuucagcCGGCc -3'
miRNA:   3'- gguaGGGCGAGCCG-----------CCGGUCAA------GCCG- -5'
30867 3' -59.9 NC_006552.1 + 64432 0.68 0.414048
Target:  5'- aUCAUCgCCGCccUCGGCcuGGCCguGGUggGGCu -3'
miRNA:   3'- -GGUAG-GGCG--AGCCG--CCGG--UCAagCCG- -5'
30867 3' -59.9 NC_006552.1 + 5107 0.68 0.441216
Target:  5'- cCCAaCUCGCg-GGCGGUCAuugCGGCa -3'
miRNA:   3'- -GGUaGGGCGagCCGCCGGUcaaGCCG- -5'
30867 3' -59.9 NC_006552.1 + 20809 0.67 0.458936
Target:  5'- -gAUCCCGCUcgcgucCGGCGGCguGgcgUCgaacguaGGCa -3'
miRNA:   3'- ggUAGGGCGA------GCCGCCGguCa--AG-------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.