Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30867 | 3' | -59.9 | NC_006552.1 | + | 18555 | 0.68 | 0.405223 |
Target: 5'- cCCGUCCCGCggagaaccgagUCGGUucGCCAGccaGGCc -3' miRNA: 3'- -GGUAGGGCG-----------AGCCGc-CGGUCaagCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 43202 | 0.68 | 0.405223 |
Target: 5'- ---gCCUGCUCGGUcuuguucaucuGGCCGGUUuucagcCGGCc -3' miRNA: 3'- gguaGGGCGAGCCG-----------CCGGUCAA------GCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 25007 | 0.69 | 0.396517 |
Target: 5'- gCCAg-CCGCUcgacagCGGCGGCaucgUCGGCg -3' miRNA: 3'- -GGUagGGCGA------GCCGCCGgucaAGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 52939 | 0.69 | 0.371136 |
Target: 5'- aCCG-CCUGCgcCGGCGcccgccGCCGGUgCGGCa -3' miRNA: 3'- -GGUaGGGCGa-GCCGC------CGGUCAaGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 64483 | 0.69 | 0.371136 |
Target: 5'- aUCAUCCgcaCGCU-GGCGGCCuGgcaGGCg -3' miRNA: 3'- -GGUAGG---GCGAgCCGCCGGuCaagCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 35102 | 0.69 | 0.362926 |
Target: 5'- -gGUgCCGCUCGGCaucuuGCCGGUcaGGCg -3' miRNA: 3'- ggUAgGGCGAGCCGc----CGGUCAagCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 45012 | 0.69 | 0.354842 |
Target: 5'- gCCAgggCCUGCUCaGCGGCggacaAGUUCGauGCg -3' miRNA: 3'- -GGUa--GGGCGAGcCGCCGg----UCAAGC--CG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 64792 | 0.7 | 0.339058 |
Target: 5'- gCAUCCUGC-CGGaaacggcguuucCGGCCGGgcCGGUa -3' miRNA: 3'- gGUAGGGCGaGCC------------GCCGGUCaaGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 39538 | 0.7 | 0.33136 |
Target: 5'- aCGUCgCCGUUCGGCGucacccGCCAGUcUGuGCg -3' miRNA: 3'- gGUAG-GGCGAGCCGC------CGGUCAaGC-CG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 32435 | 0.7 | 0.323791 |
Target: 5'- gCGUCCgUGCgaacUCGGCGGaUCAGgUCGGCc -3' miRNA: 3'- gGUAGG-GCG----AGCCGCC-GGUCaAGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 44743 | 0.71 | 0.281094 |
Target: 5'- cCCAggcCUCGUUCGGCucgGGCCGaccgUCGGCg -3' miRNA: 3'- -GGUa--GGGCGAGCCG---CCGGUca--AGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 34605 | 0.71 | 0.273769 |
Target: 5'- ---cCCCGCauUCGGCGcaacGCCAGUgauggcaUCGGCg -3' miRNA: 3'- gguaGGGCG--AGCCGC----CGGUCA-------AGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 11433 | 0.72 | 0.261478 |
Target: 5'- uUAUCCgGCUCGGCGGgCGccUCGcGCa -3' miRNA: 3'- gGUAGGgCGAGCCGCCgGUcaAGC-CG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 50413 | 0.72 | 0.237073 |
Target: 5'- gCCAUCUgGgUgGGCGGCCuGaUUGGCg -3' miRNA: 3'- -GGUAGGgCgAgCCGCCGGuCaAGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 13635 | 0.74 | 0.193991 |
Target: 5'- aCGggCCUGCUCGGCGGCC----UGGCg -3' miRNA: 3'- gGUa-GGGCGAGCCGCCGGucaaGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 55302 | 0.75 | 0.157918 |
Target: 5'- cCUA-CCCGUUCaGCGGCUGGcUCGGCg -3' miRNA: 3'- -GGUaGGGCGAGcCGCCGGUCaAGCCG- -5' |
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30867 | 3' | -59.9 | NC_006552.1 | + | 49169 | 0.78 | 0.098013 |
Target: 5'- uCCGgcugCCCGCacugCGGCGGCCuGGUcCGGCu -3' miRNA: 3'- -GGUa---GGGCGa---GCCGCCGG-UCAaGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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