miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30868 3' -59.4 NC_006552.1 + 26430 0.66 0.531993
Target:  5'- aAGGCGauCAGCGaCGGCGccgacUCCUgggGGCCGc -3'
miRNA:   3'- -UCUGUacGUCGC-GCCGU-----AGGA---CCGGC- -5'
30868 3' -59.4 NC_006552.1 + 38102 0.66 0.531993
Target:  5'- aGGACA-GCAGCcugguacugcgGCGGCAUgCUcuugacGGCCu -3'
miRNA:   3'- -UCUGUaCGUCG-----------CGCCGUAgGA------CCGGc -5'
30868 3' -59.4 NC_006552.1 + 56622 0.66 0.521697
Target:  5'- --uUcgGCGGCGCGGCuucuGUCCUgcugcggaaGGCCc -3'
miRNA:   3'- ucuGuaCGUCGCGCCG----UAGGA---------CCGGc -5'
30868 3' -59.4 NC_006552.1 + 33558 0.66 0.504376
Target:  5'- cGACAgcaGCAGgccagcgccgaaauaCGCGGCGUCCUgcggauaGGUCGc -3'
miRNA:   3'- uCUGUa--CGUC---------------GCGCCGUAGGA-------CCGGC- -5'
30868 3' -59.4 NC_006552.1 + 41834 0.66 0.500337
Target:  5'- uGGGCAuccagggUGCGGCuCGGCAUuggggucgaagCCUgGGCCGc -3'
miRNA:   3'- -UCUGU-------ACGUCGcGCCGUA-----------GGA-CCGGC- -5'
30868 3' -59.4 NC_006552.1 + 40947 0.67 0.468564
Target:  5'- gAGACGUGCAG-GCGGUGgauggugCCggaccgcauggacgUGGCCa -3'
miRNA:   3'- -UCUGUACGUCgCGCCGUa------GG--------------ACCGGc -5'
30868 3' -59.4 NC_006552.1 + 21146 0.67 0.45211
Target:  5'- uGACggGCGGCgGCGacgcgauaggcGCAUCC-GGCCGc -3'
miRNA:   3'- uCUGuaCGUCG-CGC-----------CGUAGGaCCGGC- -5'
30868 3' -59.4 NC_006552.1 + 59597 0.67 0.45211
Target:  5'- uGGACccgGCucaAGCGCaGGCcgCCUGGCa- -3'
miRNA:   3'- -UCUGua-CG---UCGCG-CCGuaGGACCGgc -5'
30868 3' -59.4 NC_006552.1 + 34631 0.67 0.451152
Target:  5'- uGGCAU-CGGCGCuGGCAacgaagugacgguUCUUGGUCGg -3'
miRNA:   3'- uCUGUAcGUCGCG-CCGU-------------AGGACCGGC- -5'
30868 3' -59.4 NC_006552.1 + 22017 0.67 0.446379
Target:  5'- uGACGgugGCGGCGuCcucgaccaggacacuGGCggCCUGGCCa -3'
miRNA:   3'- uCUGUa--CGUCGC-G---------------CCGuaGGACCGGc -5'
30868 3' -59.4 NC_006552.1 + 49002 0.67 0.44258
Target:  5'- cGGGCAagcccgGCGGCGCGaGCGUUCa-GCCGa -3'
miRNA:   3'- -UCUGUa-----CGUCGCGC-CGUAGGacCGGC- -5'
30868 3' -59.4 NC_006552.1 + 44560 0.67 0.44258
Target:  5'- uGACggGCAGCGCcuGCugCCUGGCaCGa -3'
miRNA:   3'- uCUGuaCGUCGCGc-CGuaGGACCG-GC- -5'
30868 3' -59.4 NC_006552.1 + 18278 0.68 0.423867
Target:  5'- uGGCGcaccaGCAGC-CGGCAacaCCUGGCCu -3'
miRNA:   3'- uCUGUa----CGUCGcGCCGUa--GGACCGGc -5'
30868 3' -59.4 NC_006552.1 + 63957 0.68 0.414689
Target:  5'- cGGACAgcaaucugGUGGCGCGcGCcaccaacuaCCUGGCCGc -3'
miRNA:   3'- -UCUGUa-------CGUCGCGC-CGua-------GGACCGGC- -5'
30868 3' -59.4 NC_006552.1 + 56475 0.68 0.414689
Target:  5'- uGuCAgGCAGgGCGGCGUCCaGuGCCu -3'
miRNA:   3'- uCuGUaCGUCgCGCCGUAGGaC-CGGc -5'
30868 3' -59.4 NC_006552.1 + 17599 0.68 0.379233
Target:  5'- -cGCuggGCGGCGCGGguUuggaaaccCCUGGCCu -3'
miRNA:   3'- ucUGua-CGUCGCGCCguA--------GGACCGGc -5'
30868 3' -59.4 NC_006552.1 + 22560 0.68 0.379233
Target:  5'- -aGCG-GCGGCGCaGUccAUCCUGGCCc -3'
miRNA:   3'- ucUGUaCGUCGCGcCG--UAGGACCGGc -5'
30868 3' -59.4 NC_006552.1 + 39499 0.68 0.378373
Target:  5'- -aGCcgGUaguucagAGCGuCGGCAacuUCCUGGCCGc -3'
miRNA:   3'- ucUGuaCG-------UCGC-GCCGU---AGGACCGGC- -5'
30868 3' -59.4 NC_006552.1 + 47890 0.69 0.33786
Target:  5'- aGGGCAccgGCcGCGUGGCGgugaguaCCUGGUCGu -3'
miRNA:   3'- -UCUGUa--CGuCGCGCCGUa------GGACCGGC- -5'
30868 3' -59.4 NC_006552.1 + 63178 0.69 0.33786
Target:  5'- cGACgAUGUucggAGCGCugcaaGGCguuGUCCUGGCCGc -3'
miRNA:   3'- uCUG-UACG----UCGCG-----CCG---UAGGACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.