miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30868 5' -56 NC_006552.1 + 54920 0.66 0.719361
Target:  5'- cCUCCGCUUcGACGACCUgcugcaggagcGGGCACUggACg -3'
miRNA:   3'- -GAGGUGGAcCUGUUGGG-----------UCUGUGG--UG- -5'
30868 5' -56 NC_006552.1 + 46962 0.66 0.713013
Target:  5'- aUCCGCCUGcgcagcuuuaaccguGACGaauACCCAGACGaggaguaCACc -3'
miRNA:   3'- gAGGUGGAC---------------CUGU---UGGGUCUGUg------GUG- -5'
30868 5' -56 NC_006552.1 + 24549 0.66 0.708766
Target:  5'- -aCCACCUGcauGACuucAgCCAuGGCACCGCu -3'
miRNA:   3'- gaGGUGGAC---CUGu--UgGGU-CUGUGGUG- -5'
30868 5' -56 NC_006552.1 + 26039 0.66 0.708766
Target:  5'- aUCgACCUGGcCcACCCAaAUGCCGCc -3'
miRNA:   3'- gAGgUGGACCuGuUGGGUcUGUGGUG- -5'
30868 5' -56 NC_006552.1 + 14153 0.66 0.698098
Target:  5'- gCUCuCGCCcgGGACAuccACCCAGGuguCGCCu- -3'
miRNA:   3'- -GAG-GUGGa-CCUGU---UGGGUCU---GUGGug -5'
30868 5' -56 NC_006552.1 + 13696 0.66 0.694884
Target:  5'- -gCCGCCUGGcgcacGCGAUCCuGAUuggccuucugccagGCCACg -3'
miRNA:   3'- gaGGUGGACC-----UGUUGGGuCUG--------------UGGUG- -5'
30868 5' -56 NC_006552.1 + 25933 0.66 0.687367
Target:  5'- -aCCACCUcggcagGGACAGgacugcacuaCCAGGCACCGg -3'
miRNA:   3'- gaGGUGGA------CCUGUUg---------GGUCUGUGGUg -5'
30868 5' -56 NC_006552.1 + 20367 0.66 0.687367
Target:  5'- uUCCGCgUGGaagcggGCGACCucgaaCAGGCGCUGCg -3'
miRNA:   3'- gAGGUGgACC------UGUUGG-----GUCUGUGGUG- -5'
30868 5' -56 NC_006552.1 + 30133 0.66 0.686291
Target:  5'- uUCCACCguagaUGGaACAugUCAccaguguGACACCACc -3'
miRNA:   3'- gAGGUGG-----ACC-UGUugGGU-------CUGUGGUG- -5'
30868 5' -56 NC_006552.1 + 56396 0.66 0.684137
Target:  5'- -cCCACCcgGGGCGcuaucucuuccagcACgcaCCGGACGCCGCc -3'
miRNA:   3'- gaGGUGGa-CCUGU--------------UG---GGUCUGUGGUG- -5'
30868 5' -56 NC_006552.1 + 47105 0.67 0.66576
Target:  5'- -cCCGCCUGGcCAGCCCcguccGGGuuUACCAg -3'
miRNA:   3'- gaGGUGGACCuGUUGGG-----UCU--GUGGUg -5'
30868 5' -56 NC_006552.1 + 24957 0.67 0.64403
Target:  5'- gCUUCAggCUGGcCAGCUCAGACGCCuGCu -3'
miRNA:   3'- -GAGGUg-GACCuGUUGGGUCUGUGG-UG- -5'
30868 5' -56 NC_006552.1 + 63490 0.67 0.622257
Target:  5'- -gCCGCCggcgccGGAgCAACCgGaGACACCGCc -3'
miRNA:   3'- gaGGUGGa-----CCU-GUUGGgU-CUGUGGUG- -5'
30868 5' -56 NC_006552.1 + 57502 0.67 0.622257
Target:  5'- ---gGCCUGGGCcGCCCGGugaACGCgGCa -3'
miRNA:   3'- gaggUGGACCUGuUGGGUC---UGUGgUG- -5'
30868 5' -56 NC_006552.1 + 61652 0.68 0.611379
Target:  5'- -gCCGCCggccGGACGuccaACCUGGcCGCCGCa -3'
miRNA:   3'- gaGGUGGa---CCUGU----UGGGUCuGUGGUG- -5'
30868 5' -56 NC_006552.1 + 32654 0.68 0.611379
Target:  5'- gCUCCugCUGGGCcuGCUgAGcCugCGCg -3'
miRNA:   3'- -GAGGugGACCUGu-UGGgUCuGugGUG- -5'
30868 5' -56 NC_006552.1 + 31021 0.68 0.611379
Target:  5'- ---gGCCUGGGCucgauACCCuuGACACCGa -3'
miRNA:   3'- gaggUGGACCUGu----UGGGu-CUGUGGUg -5'
30868 5' -56 NC_006552.1 + 55464 0.68 0.600518
Target:  5'- -aCUACCUGG-CGaucGCCCuGcuGCACCACa -3'
miRNA:   3'- gaGGUGGACCuGU---UGGGuC--UGUGGUG- -5'
30868 5' -56 NC_006552.1 + 61536 0.68 0.589684
Target:  5'- -aCCaggACCUGGACcuguCCCGGACGCaagCACu -3'
miRNA:   3'- gaGG---UGGACCUGuu--GGGUCUGUG---GUG- -5'
30868 5' -56 NC_006552.1 + 39105 0.68 0.589684
Target:  5'- gUCCuCCUGcACggUCCAGGC-CCGCg -3'
miRNA:   3'- gAGGuGGACcUGuuGGGUCUGuGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.