Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 30869 | 3' | -51.2 | NC_006552.1 | + | 22416 | 0.66 | 0.942536 |
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Target: 5'- cGGu--GCUUCGCUGACgGCCg----- -3' miRNA: 3'- -CCuuuCGAAGUGGCUGgCGGacauac -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 29797 | 0.66 | 0.93199 |
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Target: 5'- aGGAAGGU-UCGCCGgcggGCCGCCa----- -3' miRNA: 3'- -CCUUUCGaAGUGGC----UGGCGGacauac -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 51550 | 0.66 | 0.92629 |
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Target: 5'- aGGcGAAGCggaUCACCG-CCGCaCUG-GUGa -3' miRNA: 3'- -CC-UUUCGa--AGUGGCuGGCG-GACaUAC- -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 35154 | 0.66 | 0.920305 |
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Target: 5'- uGGcAGAGCgcgaacaaGCCGGCgGCCUGU-UGg -3' miRNA: 3'- -CC-UUUCGaag-----UGGCUGgCGGACAuAC- -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 9344 | 0.66 | 0.920305 |
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Target: 5'- uGAAGGCgUCGCUGAgCGUCUGcGUa -3' miRNA: 3'- cCUUUCGaAGUGGCUgGCGGACaUAc -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 5476 | 0.66 | 0.920305 |
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Target: 5'- cGGucAGCUUCACCGAUUgGCCa----- -3' miRNA: 3'- -CCuuUCGAAGUGGCUGG-CGGacauac -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 6298 | 0.67 | 0.907481 |
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Target: 5'- uGGAuaguGGCUaCGCUGGCCGgCUGgaagccgAUGg -3' miRNA: 3'- -CCUu---UCGAaGUGGCUGGCgGACa------UAC- -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 51838 | 0.68 | 0.836446 |
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Target: 5'- ----uGCUg-ACCGACCGCCUGg--- -3' miRNA: 3'- ccuuuCGAagUGGCUGGCGGACauac -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 55972 | 0.7 | 0.747726 |
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Target: 5'- ----cGCUUCACCGGCCgcgccgaagGCCUGUc-- -3' miRNA: 3'- ccuuuCGAAGUGGCUGG---------CGGACAuac -5' |
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| 30869 | 3' | -51.2 | NC_006552.1 | + | 34974 | 0.73 | 0.604522 |
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Target: 5'- gGGAAGGCgUUCGCCGGCUGCaCgaaGUGg -3' miRNA: 3'- -CCUUUCG-AAGUGGCUGGCG-GacaUAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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