miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30870 3' -60.1 NC_006552.1 + 19545 0.68 0.399579
Target:  5'- cCGCUGACagagCGCCGGCCgcuagcUGaGCGGUg -3'
miRNA:   3'- aGCGGCUGaa--GUGGUCGG------AC-CGCCGu -5'
30870 3' -60.1 NC_006552.1 + 13170 0.68 0.399579
Target:  5'- gUCGCgGGCgUUCugCGuacgcucgaauGCCUGGCGGa- -3'
miRNA:   3'- -AGCGgCUG-AAGugGU-----------CGGACCGCCgu -5'
30870 3' -60.1 NC_006552.1 + 26514 0.68 0.399579
Target:  5'- gCGCCuGC--CACCAGCagcGGCGGCGc -3'
miRNA:   3'- aGCGGcUGaaGUGGUCGga-CCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 34145 0.68 0.382167
Target:  5'- cCGCCcaGGCUUgCGCCagAGCCUGGCcGCc -3'
miRNA:   3'- aGCGG--CUGAA-GUGG--UCGGACCGcCGu -5'
30870 3' -60.1 NC_006552.1 + 36170 0.68 0.382167
Target:  5'- gCGCUGGCcUCGCCAGCaucGcCGGCAc -3'
miRNA:   3'- aGCGGCUGaAGUGGUCGgacC-GCCGU- -5'
30870 3' -60.1 NC_006552.1 + 15100 0.68 0.380454
Target:  5'- cCGCugCGGCUUCGCCAGguucgccucgaaCUGGCGcGCGu -3'
miRNA:   3'- aGCG--GCUGAAGUGGUCg-----------GACCGC-CGU- -5'
30870 3' -60.1 NC_006552.1 + 4732 0.68 0.373652
Target:  5'- -gGCCGAggcggcgucucCUgCACCAGCUUcGGCGGUg -3'
miRNA:   3'- agCGGCU-----------GAaGUGGUCGGA-CCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 20534 0.69 0.34889
Target:  5'- -aGCCGGCcuugcucgcgCACCAcaucuaccuGCCUGGCGaGCAu -3'
miRNA:   3'- agCGGCUGaa--------GUGGU---------CGGACCGC-CGU- -5'
30870 3' -60.1 NC_006552.1 + 55968 0.69 0.34889
Target:  5'- cCGCCG-CUUCACCGGCCgcgccgaaGGCc -3'
miRNA:   3'- aGCGGCuGAAGUGGUCGGaccg----CCGu -5'
30870 3' -60.1 NC_006552.1 + 33738 0.69 0.333043
Target:  5'- aUCGCCaAC--CGCCAGCgCggcGGCGGCAu -3'
miRNA:   3'- -AGCGGcUGaaGUGGUCG-Ga--CCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 28724 0.69 0.333043
Target:  5'- gUUGUCGAuCUgcgggaaGCCGGCC-GGCGGCGa -3'
miRNA:   3'- -AGCGGCU-GAag-----UGGUCGGaCCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 24992 0.7 0.288713
Target:  5'- uUCGUCaGGCUccUgGCCAGCCgcucgacagcGGCGGCAu -3'
miRNA:   3'- -AGCGG-CUGA--AgUGGUCGGa---------CCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 11057 0.7 0.288713
Target:  5'- cCGCCgGGCUUCAgCAGgCUGuaGGCGu -3'
miRNA:   3'- aGCGG-CUGAAGUgGUCgGACcgCCGU- -5'
30870 3' -60.1 NC_006552.1 + 47995 0.7 0.281791
Target:  5'- uUCGCCGggGCUUUACC-GCaCUGGagGGCAa -3'
miRNA:   3'- -AGCGGC--UGAAGUGGuCG-GACCg-CCGU- -5'
30870 3' -60.1 NC_006552.1 + 32188 0.7 0.268344
Target:  5'- -gGCCGACUUCagcACCGGCaUGGUcgGGCGc -3'
miRNA:   3'- agCGGCUGAAG---UGGUCGgACCG--CCGU- -5'
30870 3' -60.1 NC_006552.1 + 61024 0.71 0.25542
Target:  5'- aCGCCGaACUUgAUCAggcGCgCUGGCGGCc -3'
miRNA:   3'- aGCGGC-UGAAgUGGU---CG-GACCGCCGu -5'
30870 3' -60.1 NC_006552.1 + 34494 0.71 0.25542
Target:  5'- gUCGCCcucgaACUUCACgGGCggcGGCGGCAg -3'
miRNA:   3'- -AGCGGc----UGAAGUGgUCGga-CCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 52946 0.71 0.236997
Target:  5'- gCGCCGGCgccCGCC-GCCgGuGCGGCAu -3'
miRNA:   3'- aGCGGCUGaa-GUGGuCGGaC-CGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 24267 0.72 0.214178
Target:  5'- gUCGCCGGCacUACCGGCa--GCGGCAu -3'
miRNA:   3'- -AGCGGCUGaaGUGGUCGgacCGCCGU- -5'
30870 3' -60.1 NC_006552.1 + 36402 0.73 0.18833
Target:  5'- cUCGCCGGCgcucggagaCGCCuuGGCUUgGGCGGCAg -3'
miRNA:   3'- -AGCGGCUGaa-------GUGG--UCGGA-CCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.