Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30870 | 5' | -54 | NC_006552.1 | + | 57414 | 0.66 | 0.825377 |
Target: 5'- -gUACGGCCUGGcCCUGGaCGA-CAc -3' miRNA: 3'- cgAUGCCGGACUuGGACCaGUUcGUc -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 41039 | 0.67 | 0.767168 |
Target: 5'- gGCUGCGGCCguaggGAAgCgcucgcGGauuuccUCGGGCAGg -3' miRNA: 3'- -CGAUGCCGGa----CUUgGa-----CC------AGUUCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 64302 | 0.67 | 0.767168 |
Target: 5'- aCUGCGGCg-GAcGCCUGGUCcucaucaaGAGCGa -3' miRNA: 3'- cGAUGCCGgaCU-UGGACCAG--------UUCGUc -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 45057 | 0.67 | 0.767168 |
Target: 5'- uGCUgGCGuGCCUGcguuCCggUGGUCGGGCGa -3' miRNA: 3'- -CGA-UGC-CGGACuu--GG--ACCAGUUCGUc -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 34758 | 0.67 | 0.777284 |
Target: 5'- gGCgcCGGCCaggUGAACCagcauggacUGGUcCAGGUAGg -3' miRNA: 3'- -CGauGCCGG---ACUUGG---------ACCA-GUUCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 10416 | 0.66 | 0.78725 |
Target: 5'- cGCggcauguUGGCCUGAACCucaacuUGGUUAccAGUAGc -3' miRNA: 3'- -CGau-----GCCGGACUUGG------ACCAGU--UCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 59080 | 0.66 | 0.794129 |
Target: 5'- cGCUGCGuuCCUGAugcgcuaucacagcACCggcGGUCAaugGGCAGa -3' miRNA: 3'- -CGAUGCc-GGACU--------------UGGa--CCAGU---UCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 35925 | 0.66 | 0.79608 |
Target: 5'- aGCUugccugcGCGGCCUGGGCUUGGgccuUCcAGUg- -3' miRNA: 3'- -CGA-------UGCCGGACUUGGACC----AGuUCGuc -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 64493 | 0.66 | 0.797052 |
Target: 5'- cGCUgGCGGCCUGGcaggcgggguGCUUcGGaUgAAGCAGa -3' miRNA: 3'- -CGA-UGCCGGACU----------UGGA-CC-AgUUCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 12296 | 0.67 | 0.767168 |
Target: 5'- cGCUcguugAgGGCCUGAGCCaUGGUgCGuagucgcucGGCGGc -3' miRNA: 3'- -CGA-----UgCCGGACUUGG-ACCA-GU---------UCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 64440 | 0.67 | 0.767168 |
Target: 5'- cGCccuCGGCCUG-GCCgUGGUgGGGCuGg -3' miRNA: 3'- -CGau-GCCGGACuUGG-ACCAgUUCGuC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 35107 | 0.67 | 0.746526 |
Target: 5'- cGCU-CGGCaucuuGCC-GGUCAGGCGGu -3' miRNA: 3'- -CGAuGCCGgacu-UGGaCCAGUUCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 53616 | 0.72 | 0.456737 |
Target: 5'- gGCUGagguggaGGCCUGAGCCaUGG-CAcGCGGa -3' miRNA: 3'- -CGAUg------CCGGACUUGG-ACCaGUuCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 45006 | 0.71 | 0.497431 |
Target: 5'- uGCU-CGGCCaGGGCCUGcUCAgcGGCGGa -3' miRNA: 3'- -CGAuGCCGGaCUUGGACcAGU--UCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 18607 | 0.71 | 0.528988 |
Target: 5'- aCUGCGGagUGAaaccaGCCgcuuugGGUCGAGCAGg -3' miRNA: 3'- cGAUGCCggACU-----UGGa-----CCAGUUCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 59582 | 0.7 | 0.571043 |
Target: 5'- cCUACGGCgUGGAgCUGGacccggcUCAAGCGc -3' miRNA: 3'- cGAUGCCGgACUUgGACC-------AGUUCGUc -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 50133 | 0.7 | 0.572134 |
Target: 5'- aGCUACGGCCccGAAuuacucaucgcCCUGGagCAGGCGu -3' miRNA: 3'- -CGAUGCCGGa-CUU-----------GGACCa-GUUCGUc -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 62194 | 0.69 | 0.660211 |
Target: 5'- cGCcAgGGCCaGAucaccGCCUGGUCAuugucgGGCGGa -3' miRNA: 3'- -CGaUgCCGGaCU-----UGGACCAGU------UCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 8174 | 0.68 | 0.693082 |
Target: 5'- uGCgcauCGGCCgcguccaucACCUGGUCGcGCAGu -3' miRNA: 3'- -CGau--GCCGGacu------UGGACCAGUuCGUC- -5' |
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30870 | 5' | -54 | NC_006552.1 | + | 64235 | 0.68 | 0.713642 |
Target: 5'- gGUUGCGGCCa-GACCUGGagcuUCAuugaggacggaccAGCAGa -3' miRNA: 3'- -CGAUGCCGGacUUGGACC----AGU-------------UCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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