miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30871 3' -49.3 NC_006552.1 + 60548 0.66 0.974402
Target:  5'- aGCACCGUUcgccggCGAcuCgCCGCAGgCAu -3'
miRNA:   3'- -CGUGGCAAuaa---GUUuuGgGGCGUC-GU- -5'
30871 3' -49.3 NC_006552.1 + 64601 0.66 0.971373
Target:  5'- gGUACUGg---UCAugGCCCUGguGCu -3'
miRNA:   3'- -CGUGGCaauaAGUuuUGGGGCguCGu -5'
30871 3' -49.3 NC_006552.1 + 22138 0.66 0.968095
Target:  5'- gGCACCGUccaccgUC-AGGCCgCGCAcGCGa -3'
miRNA:   3'- -CGUGGCAaua---AGuUUUGGgGCGU-CGU- -5'
30871 3' -49.3 NC_006552.1 + 15020 0.66 0.967753
Target:  5'- gGCGCCaGUggcUUCAGcacgcggGGCUgCGCAGCAg -3'
miRNA:   3'- -CGUGG-CAau-AAGUU-------UUGGgGCGUCGU- -5'
30871 3' -49.3 NC_006552.1 + 26445 0.66 0.964558
Target:  5'- gGCGCCGacuccUgGGGGCCgCGCAGCc -3'
miRNA:   3'- -CGUGGCaaua-AgUUUUGGgGCGUCGu -5'
30871 3' -49.3 NC_006552.1 + 37556 0.66 0.964558
Target:  5'- -uGCCGUgcucggaguUUCGAuACCgCGCAGCc -3'
miRNA:   3'- cgUGGCAau-------AAGUUuUGGgGCGUCGu -5'
30871 3' -49.3 NC_006552.1 + 50672 0.66 0.964558
Target:  5'- uGCgACUGagcUAUUCG--GCCCCGuCGGCAa -3'
miRNA:   3'- -CG-UGGCa--AUAAGUuuUGGGGC-GUCGU- -5'
30871 3' -49.3 NC_006552.1 + 48324 0.66 0.964558
Target:  5'- gGCgACCGUUgcugccuggaAUUCcgcauACCCCGcCGGCAc -3'
miRNA:   3'- -CG-UGGCAA----------UAAGuuu--UGGGGC-GUCGU- -5'
30871 3' -49.3 NC_006552.1 + 64171 0.67 0.947688
Target:  5'- cGCGCCGaccaGUUCGGcauCCCCGUcguGCAa -3'
miRNA:   3'- -CGUGGCaa--UAAGUUuu-GGGGCGu--CGU- -5'
30871 3' -49.3 NC_006552.1 + 5436 0.67 0.94276
Target:  5'- cGCGCCaGUUGUUC---GCCgCGCuGGCGg -3'
miRNA:   3'- -CGUGG-CAAUAAGuuuUGGgGCG-UCGU- -5'
30871 3' -49.3 NC_006552.1 + 29287 0.67 0.94276
Target:  5'- -aACCGUgggAUUCGc-GCCCCacgGCGGCGg -3'
miRNA:   3'- cgUGGCAa--UAAGUuuUGGGG---CGUCGU- -5'
30871 3' -49.3 NC_006552.1 + 38977 0.68 0.932024
Target:  5'- uGCGCCagGUUGUUCGGgucguacucGACCaCGCGGCc -3'
miRNA:   3'- -CGUGG--CAAUAAGUU---------UUGGgGCGUCGu -5'
30871 3' -49.3 NC_006552.1 + 12516 0.68 0.932024
Target:  5'- uCGCCGaaUUGUUCAGGGugucguaguCCUCGCGGCu -3'
miRNA:   3'- cGUGGC--AAUAAGUUUU---------GGGGCGUCGu -5'
30871 3' -49.3 NC_006552.1 + 23552 0.68 0.932024
Target:  5'- cGCACUGgac--CGGAGCCCCGaAGUAg -3'
miRNA:   3'- -CGUGGCaauaaGUUUUGGGGCgUCGU- -5'
30871 3' -49.3 NC_006552.1 + 28580 0.68 0.928573
Target:  5'- cGCGCCGUUGUagacggcaugccaauUCAGGAU-CgGCGGCGg -3'
miRNA:   3'- -CGUGGCAAUA---------------AGUUUUGgGgCGUCGU- -5'
30871 3' -49.3 NC_006552.1 + 36097 0.68 0.920104
Target:  5'- aGCGCCGgcg-UCAcccgcGCCCUGCuGCGc -3'
miRNA:   3'- -CGUGGCaauaAGUuu---UGGGGCGuCGU- -5'
30871 3' -49.3 NC_006552.1 + 62380 0.68 0.907002
Target:  5'- -gACCGcaacUGUUCGacugGAACCCCGCGGa- -3'
miRNA:   3'- cgUGGCa---AUAAGU----UUUGGGGCGUCgu -5'
30871 3' -49.3 NC_006552.1 + 47629 0.69 0.900012
Target:  5'- aGCACCGcaag-CGAGAgUCgGCAGCAa -3'
miRNA:   3'- -CGUGGCaauaaGUUUUgGGgCGUCGU- -5'
30871 3' -49.3 NC_006552.1 + 33616 0.71 0.815319
Target:  5'- aCGCCGUcggcgUAggCAAAGCCCaCGuCAGCGg -3'
miRNA:   3'- cGUGGCA-----AUaaGUUUUGGG-GC-GUCGU- -5'
30871 3' -49.3 NC_006552.1 + 44703 0.73 0.721416
Target:  5'- aGCACCGUUucagccucgUCGAAGCUCUGUagGGCGa -3'
miRNA:   3'- -CGUGGCAAua-------AGUUUUGGGGCG--UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.