miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30871 5' -57.3 NC_006552.1 + 2039 0.66 0.656102
Target:  5'- cUGCGC-CUggGACaggcgcuuGAGCGCGCCg -3'
miRNA:   3'- -ACGCGaGGuuCUGgac-----CUCGUGUGGg -5'
30871 5' -57.3 NC_006552.1 + 31006 0.66 0.656102
Target:  5'- gGCGUcagUUCAauGGGCCUGG-GCucgAUACCCu -3'
miRNA:   3'- aCGCG---AGGU--UCUGGACCuCG---UGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 63064 0.66 0.656102
Target:  5'- -uCGC-CCAGGugCUGG-GCAUGgCCa -3'
miRNA:   3'- acGCGaGGUUCugGACCuCGUGUgGG- -5'
30871 5' -57.3 NC_006552.1 + 46761 0.66 0.645321
Target:  5'- aGUcCUCCGGGAgUCgGGAGUAgACCCc -3'
miRNA:   3'- aCGcGAGGUUCU-GGaCCUCGUgUGGG- -5'
30871 5' -57.3 NC_006552.1 + 26967 0.66 0.638846
Target:  5'- gGCGUUgccgUCAGGgcggauguaguggacACCUGGccgcacauugGGCACGCCCa -3'
miRNA:   3'- aCGCGA----GGUUC---------------UGGACC----------UCGUGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 31677 0.66 0.634528
Target:  5'- gGUGCcuucgucggCCGAGAUCUGcaGGCGCGCCa -3'
miRNA:   3'- aCGCGa--------GGUUCUGGACc-UCGUGUGGg -5'
30871 5' -57.3 NC_006552.1 + 64237 0.66 0.623733
Target:  5'- uUGCGg-CC-AGACCUGGAGCuuCAUUg -3'
miRNA:   3'- -ACGCgaGGuUCUGGACCUCGu-GUGGg -5'
30871 5' -57.3 NC_006552.1 + 18095 0.66 0.612945
Target:  5'- gGCaCUCCGcugaccACCUGGGGCGaACCCc -3'
miRNA:   3'- aCGcGAGGUuc----UGGACCUCGUgUGGG- -5'
30871 5' -57.3 NC_006552.1 + 60434 0.67 0.602173
Target:  5'- cGCGCacuggaCCAGGcccGCCaGGcacgcaaggaaaAGCACACCCa -3'
miRNA:   3'- aCGCGa-----GGUUC---UGGaCC------------UCGUGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 2267 0.67 0.591426
Target:  5'- --gGUUCCAGGccuuCCUGGAGC-CuCCCc -3'
miRNA:   3'- acgCGAGGUUCu---GGACCUCGuGuGGG- -5'
30871 5' -57.3 NC_006552.1 + 16794 0.67 0.591426
Target:  5'- cGCGCcggcugCCAcaGGugCcaacgcUGGAGCcaGCGCCCg -3'
miRNA:   3'- aCGCGa-----GGU--UCugG------ACCUCG--UGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 15968 0.67 0.570039
Target:  5'- uUGC-CUCCucGGCagccugCUGGAGCGCGgCCu -3'
miRNA:   3'- -ACGcGAGGuuCUG------GACCUCGUGUgGG- -5'
30871 5' -57.3 NC_006552.1 + 32497 0.67 0.548846
Target:  5'- aUGCGCgCguGGACggcaucacgGGAGCGCGCCa -3'
miRNA:   3'- -ACGCGaGguUCUGga-------CCUCGUGUGGg -5'
30871 5' -57.3 NC_006552.1 + 51474 0.68 0.53834
Target:  5'- cUGCGCaCCA--GCCUGGAaGC-CGCUCg -3'
miRNA:   3'- -ACGCGaGGUucUGGACCU-CGuGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 11082 0.68 0.527905
Target:  5'- cGUGCUgUAcGugCUGGAuGuCGCGCCCc -3'
miRNA:   3'- aCGCGAgGUuCugGACCU-C-GUGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 61526 0.68 0.527905
Target:  5'- gGCGUcgaucaCCAGGACCUGGAccugucccggacGCaaGCACUCg -3'
miRNA:   3'- aCGCGa-----GGUUCUGGACCU------------CG--UGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 16019 0.68 0.527905
Target:  5'- uUGCGCcacugUCCAcGGCCUGcGcAGCAgCACCa -3'
miRNA:   3'- -ACGCG-----AGGUuCUGGAC-C-UCGU-GUGGg -5'
30871 5' -57.3 NC_006552.1 + 7156 0.68 0.524789
Target:  5'- gGCGCgCCAcgcuguuggacgcaAGugCUcGAGCAuCACCCa -3'
miRNA:   3'- aCGCGaGGU--------------UCugGAcCUCGU-GUGGG- -5'
30871 5' -57.3 NC_006552.1 + 57488 0.68 0.517546
Target:  5'- cGgGCUUgGaaauGGGCCUGG-GC-CGCCCg -3'
miRNA:   3'- aCgCGAGgU----UCUGGACCuCGuGUGGG- -5'
30871 5' -57.3 NC_006552.1 + 60058 0.68 0.507268
Target:  5'- cUGCGCU-CGAGGCCUGcggcggucGGGC-CACUCu -3'
miRNA:   3'- -ACGCGAgGUUCUGGAC--------CUCGuGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.