miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30872 3' -53.6 NC_006552.1 + 44446 0.66 0.842381
Target:  5'- cGUgCUGuUCGAgcagcaacugcgcUGCCGGCGCcgGCAg -3'
miRNA:   3'- cUAgGACcAGCU-------------AUGGCCGCGuaUGU- -5'
30872 3' -53.6 NC_006552.1 + 8259 0.67 0.767168
Target:  5'- uGUCCaggcuacGGUCGGUGgCGGCGCggaacucgcgGUACAg -3'
miRNA:   3'- cUAGGa------CCAGCUAUgGCCGCG----------UAUGU- -5'
30872 3' -53.6 NC_006552.1 + 5033 0.67 0.756911
Target:  5'- cGUCCUGGUacaGGUGCCgauaGGUaaGCGUGCu -3'
miRNA:   3'- cUAGGACCAg--CUAUGG----CCG--CGUAUGu -5'
30872 3' -53.6 NC_006552.1 + 43496 0.68 0.736024
Target:  5'- cGGUCCUGuaGUUgcaGAUGCCGGCGauucguacCGUGCAc -3'
miRNA:   3'- -CUAGGAC--CAG---CUAUGGCCGC--------GUAUGU- -5'
30872 3' -53.6 NC_006552.1 + 28837 0.68 0.732853
Target:  5'- uGUCCgGGUCGuacuccuggaccacGUACUGGCGCAg--- -3'
miRNA:   3'- cUAGGaCCAGC--------------UAUGGCCGCGUaugu -5'
30872 3' -53.6 NC_006552.1 + 13671 0.68 0.725418
Target:  5'- -uUCCUcGUCGGUACgGGCGUccaGUGCc -3'
miRNA:   3'- cuAGGAcCAGCUAUGgCCGCG---UAUGu -5'
30872 3' -53.6 NC_006552.1 + 6196 0.68 0.725418
Target:  5'- --cCCUGGUCuuucucgaaGAUGCCGGcCGCccACAu -3'
miRNA:   3'- cuaGGACCAG---------CUAUGGCC-GCGuaUGU- -5'
30872 3' -53.6 NC_006552.1 + 62583 0.69 0.671209
Target:  5'- cGAUCCUGGcUCGAcaagggcGCCGaGCGCG-GCAc -3'
miRNA:   3'- -CUAGGACC-AGCUa------UGGC-CGCGUaUGU- -5'
30872 3' -53.6 NC_006552.1 + 32120 0.69 0.660211
Target:  5'- --cCCUGGaUGGcguacagcggcuUGCCGGUGCAUGCGc -3'
miRNA:   3'- cuaGGACCaGCU------------AUGGCCGCGUAUGU- -5'
30872 3' -53.6 NC_006552.1 + 65083 0.73 0.43707
Target:  5'- --aCCUGGaCGccGCCGGCGCcgGCAa -3'
miRNA:   3'- cuaGGACCaGCuaUGGCCGCGuaUGU- -5'
30872 3' -53.6 NC_006552.1 + 51030 0.74 0.408508
Target:  5'- aGcgCCUGGcCGAUGCCGGCGaucccgagACAg -3'
miRNA:   3'- -CuaGGACCaGCUAUGGCCGCgua-----UGU- -5'
30872 3' -53.6 NC_006552.1 + 3574 0.76 0.314365
Target:  5'- aGGUgCUGGcCGAgccGCCGGCGCcgGCAg -3'
miRNA:   3'- -CUAgGACCaGCUa--UGGCCGCGuaUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.