miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30873 3' -61 NC_006552.1 + 37974 0.66 0.494749
Target:  5'- -gGGCgucuUGCaCGGCCUgGUCGAUCugCUg -3'
miRNA:   3'- ugCCG----AUG-GCCGGA-CGGCUAGugGGg -5'
30873 3' -61 NC_006552.1 + 6163 0.66 0.494749
Target:  5'- uCGGCUAUU-GCUUGCCGcgCGCgCUCa -3'
miRNA:   3'- uGCCGAUGGcCGGACGGCuaGUG-GGG- -5'
30873 3' -61 NC_006552.1 + 27697 0.66 0.494749
Target:  5'- cCGGCUGgaugguucugcUUGGCCUGCuCGggUGCCUCc -3'
miRNA:   3'- uGCCGAU-----------GGCCGGACG-GCuaGUGGGG- -5'
30873 3' -61 NC_006552.1 + 29605 0.66 0.475337
Target:  5'- uUGGCccucUACCGGCg-GCaacUCACCCCa -3'
miRNA:   3'- uGCCG----AUGGCCGgaCGgcuAGUGGGG- -5'
30873 3' -61 NC_006552.1 + 44663 0.66 0.465775
Target:  5'- uGCGGCUACCacagccGCCUGCUGGauuuccggcgUCAUaagcaCCg -3'
miRNA:   3'- -UGCCGAUGGc-----CGGACGGCU----------AGUGg----GG- -5'
30873 3' -61 NC_006552.1 + 48459 0.66 0.456313
Target:  5'- cUGGCUcGCUGGCgUGuCCGGUUgcguuGCCCUu -3'
miRNA:   3'- uGCCGA-UGGCCGgAC-GGCUAG-----UGGGG- -5'
30873 3' -61 NC_006552.1 + 5305 0.66 0.456313
Target:  5'- uCGaGCUACCGcGCCaguuggugaUGCCGAacUgGCCCg -3'
miRNA:   3'- uGC-CGAUGGC-CGG---------ACGGCU--AgUGGGg -5'
30873 3' -61 NC_006552.1 + 11136 0.66 0.446955
Target:  5'- uACGGUcgUACU-GCUUGCCGGaCACCuCCa -3'
miRNA:   3'- -UGCCG--AUGGcCGGACGGCUaGUGG-GG- -5'
30873 3' -61 NC_006552.1 + 883 0.67 0.437705
Target:  5'- cCGGCUAUCGuCC-GCCcagCGCCCCu -3'
miRNA:   3'- uGCCGAUGGCcGGaCGGcuaGUGGGG- -5'
30873 3' -61 NC_006552.1 + 15194 0.67 0.436786
Target:  5'- -aGGUccaCGGCCuugauggUGCCGGUCGCCUUg -3'
miRNA:   3'- ugCCGaugGCCGG-------ACGGCUAGUGGGG- -5'
30873 3' -61 NC_006552.1 + 60157 0.67 0.428566
Target:  5'- uGCGGCagaucGCCGGCCagcacuuccGCCGGaucCGCCCa -3'
miRNA:   3'- -UGCCGa----UGGCCGGa--------CGGCUa--GUGGGg -5'
30873 3' -61 NC_006552.1 + 62755 0.67 0.428566
Target:  5'- gGCGggcGCUGCCGcGCCUGCgagCGA-CGCCUg -3'
miRNA:   3'- -UGC---CGAUGGC-CGGACG---GCUaGUGGGg -5'
30873 3' -61 NC_006552.1 + 28734 0.67 0.427659
Target:  5'- uGCGGgaaGCCGGCCggcggcgaaggcaUGCCGAUggUGCCCa -3'
miRNA:   3'- -UGCCga-UGGCCGG-------------ACGGCUA--GUGGGg -5'
30873 3' -61 NC_006552.1 + 32125 0.67 0.419541
Target:  5'- gAUGGCgUACagCGGCUUGCCGGUgcaugCGCgCCa -3'
miRNA:   3'- -UGCCG-AUG--GCCGGACGGCUA-----GUGgGG- -5'
30873 3' -61 NC_006552.1 + 27837 0.67 0.419541
Target:  5'- cACGGCUGgCaGGCCguaGCCGucCACCUUg -3'
miRNA:   3'- -UGCCGAUgG-CCGGa--CGGCuaGUGGGG- -5'
30873 3' -61 NC_006552.1 + 38466 0.67 0.410631
Target:  5'- uGCcGCUGgUGGCCgUGCCuuugCGCCCCu -3'
miRNA:   3'- -UGcCGAUgGCCGG-ACGGcua-GUGGGG- -5'
30873 3' -61 NC_006552.1 + 53522 0.67 0.410631
Target:  5'- -aGGCUcACCGcGCgaUGCCGGaCGCCCa -3'
miRNA:   3'- ugCCGA-UGGC-CGg-ACGGCUaGUGGGg -5'
30873 3' -61 NC_006552.1 + 8533 0.67 0.401841
Target:  5'- gACGcGC-ACCGGCUUGCUGuccacgucgCGCgCCCa -3'
miRNA:   3'- -UGC-CGaUGGCCGGACGGCua-------GUG-GGG- -5'
30873 3' -61 NC_006552.1 + 17888 0.67 0.401841
Target:  5'- -aGGCUGCauucaaggCGGCCUGgCGAacgcuaUCGgCCCg -3'
miRNA:   3'- ugCCGAUG--------GCCGGACgGCU------AGUgGGG- -5'
30873 3' -61 NC_006552.1 + 9572 0.67 0.401841
Target:  5'- aACGGCUGUCGGCgaaCUGAUgGCCCUg -3'
miRNA:   3'- -UGCCGAUGGCCGgacGGCUAgUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.