miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30875 5' -48.7 NC_006552.1 + 27428 0.66 0.983926
Target:  5'- cGGCAGGCaccccgaguAACAUCGaaUCAgcACCGGcgAACu -3'
miRNA:   3'- -CCGUCCGc--------UUGUAGU--AGU--UGGCU--UUG- -5'
30875 5' -48.7 NC_006552.1 + 54117 0.66 0.983926
Target:  5'- cGCAGGCucuggcGCAUCGUCugagcGCCGGGc- -3'
miRNA:   3'- cCGUCCGcu----UGUAGUAGu----UGGCUUug -5'
30875 5' -48.7 NC_006552.1 + 30670 0.66 0.983926
Target:  5'- aGGCGGuGUaGAUGUCGUCGAgCGAuGCc -3'
miRNA:   3'- -CCGUC-CGcUUGUAGUAGUUgGCUuUG- -5'
30875 5' -48.7 NC_006552.1 + 63077 0.66 0.979393
Target:  5'- gGGCAuGGCcAACGcCGUC-GCCGAGAa -3'
miRNA:   3'- -CCGU-CCGcUUGUaGUAGuUGGCUUUg -5'
30875 5' -48.7 NC_006552.1 + 2599 0.67 0.967589
Target:  5'- cGGCucgaAGGCGAuGCGcUCGuagcUCAGCCGAuuCg -3'
miRNA:   3'- -CCG----UCCGCU-UGU-AGU----AGUUGGCUuuG- -5'
30875 5' -48.7 NC_006552.1 + 10464 0.67 0.961736
Target:  5'- cGCAGGCGAgccagcGCAgugccgccuucuggCAUCAcugccACCGGGAUa -3'
miRNA:   3'- cCGUCCGCU------UGUa-------------GUAGU-----UGGCUUUG- -5'
30875 5' -48.7 NC_006552.1 + 59260 0.67 0.960166
Target:  5'- -cCAGGgauuuccgacCGAcuACAUCAUCGACCGcgGCg -3'
miRNA:   3'- ccGUCC----------GCU--UGUAGUAGUUGGCuuUG- -5'
30875 5' -48.7 NC_006552.1 + 7234 0.67 0.960166
Target:  5'- cGCGGGCcuGCGcCAUCAACUGGugGACc -3'
miRNA:   3'- cCGUCCGcuUGUaGUAGUUGGCU--UUG- -5'
30875 5' -48.7 NC_006552.1 + 42788 0.67 0.960166
Target:  5'- cGGaCAGGCGGuCAUCGaCAacGCCGGGc- -3'
miRNA:   3'- -CC-GUCCGCUuGUAGUaGU--UGGCUUug -5'
30875 5' -48.7 NC_006552.1 + 50610 0.67 0.960166
Target:  5'- aGGCAGGCGAAgcUCAaCggUCaGGACa -3'
miRNA:   3'- -CCGUCCGCUUguAGUaGuuGGcUUUG- -5'
30875 5' -48.7 NC_006552.1 + 31659 0.68 0.951646
Target:  5'- uGCGGGguuuUGAAUAacggugccuUCGUCGGCCGAGAUc -3'
miRNA:   3'- cCGUCC----GCUUGU---------AGUAGUUGGCUUUG- -5'
30875 5' -48.7 NC_006552.1 + 3748 0.68 0.936715
Target:  5'- cGCGGGgGcGACAUCAaUGGCCGAGGa -3'
miRNA:   3'- cCGUCCgC-UUGUAGUaGUUGGCUUUg -5'
30875 5' -48.7 NC_006552.1 + 32797 0.68 0.93115
Target:  5'- --uGGGUGAACAUCAgc--CCGGAGCc -3'
miRNA:   3'- ccgUCCGCUUGUAGUaguuGGCUUUG- -5'
30875 5' -48.7 NC_006552.1 + 34792 0.69 0.921629
Target:  5'- aGGUAGGCGucCAugaaccacuucgccuUCGgaCGGCCGAGGCg -3'
miRNA:   3'- -CCGUCCGCuuGU---------------AGUa-GUUGGCUUUG- -5'
30875 5' -48.7 NC_006552.1 + 22020 0.69 0.91913
Target:  5'- cGguGGCG-GCGUCcUCGACCaGGACa -3'
miRNA:   3'- cCguCCGCuUGUAGuAGUUGGcUUUG- -5'
30875 5' -48.7 NC_006552.1 + 32208 0.69 0.91913
Target:  5'- uGGuCGGGCGcGACAU-AUCGGCCGGGu- -3'
miRNA:   3'- -CC-GUCCGC-UUGUAgUAGUUGGCUUug -5'
30875 5' -48.7 NC_006552.1 + 4858 0.69 0.905926
Target:  5'- aGCAaGGCGAGCGauuUCAGCCuGAGCa -3'
miRNA:   3'- cCGU-CCGCUUGUaguAGUUGGcUUUG- -5'
30875 5' -48.7 NC_006552.1 + 23774 0.7 0.891557
Target:  5'- cGGCccGCGccAAUAUCugcgCAACCGGAACg -3'
miRNA:   3'- -CCGucCGC--UUGUAGua--GUUGGCUUUG- -5'
30875 5' -48.7 NC_006552.1 + 33507 0.7 0.890057
Target:  5'- gGGCAGcGCGAACAgcgccuuGCUGGAACu -3'
miRNA:   3'- -CCGUC-CGCUUGUaguagu-UGGCUUUG- -5'
30875 5' -48.7 NC_006552.1 + 29375 0.7 0.876057
Target:  5'- uGGUAGGCGAcaaAUCcgGUCGGCUGAAc- -3'
miRNA:   3'- -CCGUCCGCUug-UAG--UAGUUGGCUUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.