miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30876 3' -57.1 NC_006552.1 + 11254 0.66 0.639593
Target:  5'- gGUCUgcucgcggAUCGCGUCGGCCAauAugGCCc -3'
miRNA:   3'- -CAGG--------UGGCGUAGUCGGUgcUugCGGu -5'
30876 3' -57.1 NC_006552.1 + 41395 0.66 0.628775
Target:  5'- -gCCACUcaGgGUCAGCCAgGcagcGCGCCAg -3'
miRNA:   3'- caGGUGG--CgUAGUCGGUgCu---UGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 11994 0.66 0.628775
Target:  5'- aGUCCACCGUcUCGGCgucCACcggcuCGCCGc -3'
miRNA:   3'- -CAGGUGGCGuAGUCG---GUGcuu--GCGGU- -5'
30876 3' -57.1 NC_006552.1 + 28475 0.66 0.627693
Target:  5'- aUCCACCGaGUCgaAGCCGcCGAugcggucgaaguaACGCCGc -3'
miRNA:   3'- cAGGUGGCgUAG--UCGGU-GCU-------------UGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 24549 0.66 0.628775
Target:  5'- -aCCACCuGCAugacuUCAGCCAUGGcacCGCUg -3'
miRNA:   3'- caGGUGG-CGU-----AGUCGGUGCUu--GCGGu -5'
30876 3' -57.1 NC_006552.1 + 40565 0.66 0.639593
Target:  5'- aGUCCGCgCGCuuggUGGCCACGuaccACGCa- -3'
miRNA:   3'- -CAGGUG-GCGua--GUCGGUGCu---UGCGgu -5'
30876 3' -57.1 NC_006552.1 + 33784 0.66 0.670894
Target:  5'- -cCgGCCGCGUUGGUCGCGAgcugauaACGCa- -3'
miRNA:   3'- caGgUGGCGUAGUCGGUGCU-------UGCGgu -5'
30876 3' -57.1 NC_006552.1 + 63206 0.66 0.639593
Target:  5'- uGUCCugGCCGCAaCGGUgaacccucgcggCACGuGCGCCGg -3'
miRNA:   3'- -CAGG--UGGCGUaGUCG------------GUGCuUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 31388 0.66 0.650405
Target:  5'- cGUCaCAuCCGCAccgUCGGCgGCGc-CGCCAg -3'
miRNA:   3'- -CAG-GU-GGCGU---AGUCGgUGCuuGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 921 0.66 0.639593
Target:  5'- -gCCACUGU-UCAGCCACGugucgaAACGUCu -3'
miRNA:   3'- caGGUGGCGuAGUCGGUGC------UUGCGGu -5'
30876 3' -57.1 NC_006552.1 + 63598 0.66 0.639593
Target:  5'- aUCCACCaCAcCAGCC-CGcAGCGCUg -3'
miRNA:   3'- cAGGUGGcGUaGUCGGuGC-UUGCGGu -5'
30876 3' -57.1 NC_006552.1 + 3655 0.66 0.650405
Target:  5'- -aCCGCCGaCGaCGGUgAccCGAACGCCAg -3'
miRNA:   3'- caGGUGGC-GUaGUCGgU--GCUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 8481 0.66 0.6612
Target:  5'- uGUCCGCCuucuCGUCGGCCGuCaGACGCa- -3'
miRNA:   3'- -CAGGUGGc---GUAGUCGGU-GcUUGCGgu -5'
30876 3' -57.1 NC_006552.1 + 56863 0.66 0.650405
Target:  5'- --gCGCCGCGgcgAGCgGCGAACGCa- -3'
miRNA:   3'- cagGUGGCGUag-UCGgUGCUUGCGgu -5'
30876 3' -57.1 NC_006552.1 + 41025 0.66 0.628775
Target:  5'- aGUUCAuCCGCGUUGGCUGCGGccguagggaaGCGCUc -3'
miRNA:   3'- -CAGGU-GGCGUAGUCGGUGCU----------UGCGGu -5'
30876 3' -57.1 NC_006552.1 + 51473 0.67 0.607156
Target:  5'- --aCugCGCAcCAGCCugGAA-GCCGc -3'
miRNA:   3'- cagGugGCGUaGUCGGugCUUgCGGU- -5'
30876 3' -57.1 NC_006552.1 + 16319 0.67 0.579186
Target:  5'- cGUCCGCaucCGUCaAGCCACGGGaugcggccggcugacCGCCAu -3'
miRNA:   3'- -CAGGUGgc-GUAG-UCGGUGCUU---------------GCGGU- -5'
30876 3' -57.1 NC_006552.1 + 3970 0.67 0.574905
Target:  5'- --gUACCaGCAUCAGCCAUGcAGCGUg- -3'
miRNA:   3'- cagGUGG-CGUAGUCGGUGC-UUGCGgu -5'
30876 3' -57.1 NC_006552.1 + 18474 0.67 0.564235
Target:  5'- -aCCGCCGCAagCGccCCACGcACGCCGg -3'
miRNA:   3'- caGGUGGCGUa-GUc-GGUGCuUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 20229 0.67 0.563171
Target:  5'- cUCCACgGCggucuuguaggcaGUCAGCUugGAGauaGCCGc -3'
miRNA:   3'- cAGGUGgCG-------------UAGUCGGugCUUg--CGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.