miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30876 3' -57.1 NC_006552.1 + 33784 0.66 0.670894
Target:  5'- -cCgGCCGCGUUGGUCGCGAgcugauaACGCa- -3'
miRNA:   3'- caGgUGGCGUAGUCGGUGCU-------UGCGgu -5'
30876 3' -57.1 NC_006552.1 + 55966 0.7 0.423233
Target:  5'- uUCCGCCGCuucacCGGCCGCgccGAAgGCCu -3'
miRNA:   3'- cAGGUGGCGua---GUCGGUG---CUUgCGGu -5'
30876 3' -57.1 NC_006552.1 + 26453 0.7 0.432629
Target:  5'- cUCCuggggGCCGCG-CAGCCACGccacagccGCGCCGu -3'
miRNA:   3'- cAGG-----UGGCGUaGUCGGUGCu-------UGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 38766 0.69 0.485358
Target:  5'- uGUCCugCGCGuacuUCAuGCCGCgcacguagccguaugGAAUGCCAg -3'
miRNA:   3'- -CAGGugGCGU----AGU-CGGUG---------------CUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 26830 0.69 0.491408
Target:  5'- uGUUCACCGCAUCacgcacauagAGCCuCGGGCucucGCCGc -3'
miRNA:   3'- -CAGGUGGCGUAG----------UCGGuGCUUG----CGGU- -5'
30876 3' -57.1 NC_006552.1 + 10138 0.68 0.511818
Target:  5'- cGUCCACCaaGUcgCGGCCguuGAACGUCAc -3'
miRNA:   3'- -CAGGUGG--CGuaGUCGGug-CUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 13778 0.68 0.532571
Target:  5'- uGUCCGCCuGCuugcuguUCAGuCCA-GAACGCCc -3'
miRNA:   3'- -CAGGUGG-CGu------AGUC-GGUgCUUGCGGu -5'
30876 3' -57.1 NC_006552.1 + 62232 0.68 0.532571
Target:  5'- -aUCACCGaGUcCAGCCACGGaaucgcGCGCCu -3'
miRNA:   3'- caGGUGGCgUA-GUCGGUGCU------UGCGGu -5'
30876 3' -57.1 NC_006552.1 + 12731 0.67 0.553618
Target:  5'- uGUUC-CgGCGUCAgGCgCAUGAACGCCu -3'
miRNA:   3'- -CAGGuGgCGUAGU-CG-GUGCUUGCGGu -5'
30876 3' -57.1 NC_006552.1 + 13582 0.7 0.420438
Target:  5'- aUCCugCGCAUCAgGCUGCGGuccccgucuuccuuGCGCUg -3'
miRNA:   3'- cAGGugGCGUAGU-CGGUGCU--------------UGCGGu -5'
30876 3' -57.1 NC_006552.1 + 2000 0.7 0.386911
Target:  5'- ---gGCUGCAUCAGCCugGAucCGCUg -3'
miRNA:   3'- caggUGGCGUAGUCGGugCUu-GCGGu -5'
30876 3' -57.1 NC_006552.1 + 50491 0.71 0.369536
Target:  5'- -aUUACCGCGgaacaacCAGCCACG-GCGCCGg -3'
miRNA:   3'- caGGUGGCGUa------GUCGGUGCuUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 63763 0.78 0.125189
Target:  5'- -aCCGCCGCcaauaugcgccagGUC-GCCGCGGACGCCAu -3'
miRNA:   3'- caGGUGGCG-------------UAGuCGGUGCUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 63371 0.75 0.193249
Target:  5'- gGUCCGCaccuGCGUCGGCCACGccaaaGCCAu -3'
miRNA:   3'- -CAGGUGg---CGUAGUCGGUGCuug--CGGU- -5'
30876 3' -57.1 NC_006552.1 + 8116 0.74 0.225997
Target:  5'- uUCCgGCCauGCAUCAGCCAUcuGCGCCAg -3'
miRNA:   3'- cAGG-UGG--CGUAGUCGGUGcuUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 8170 0.74 0.240363
Target:  5'- cUCCugCGCAUCGGCCGCGuccaucaccuggucGCGCa- -3'
miRNA:   3'- cAGGugGCGUAGUCGGUGCu-------------UGCGgu -5'
30876 3' -57.1 NC_006552.1 + 22143 0.73 0.270019
Target:  5'- cGUCCACCGUca-GGCCGCGcACGCg- -3'
miRNA:   3'- -CAGGUGGCGuagUCGGUGCuUGCGgu -5'
30876 3' -57.1 NC_006552.1 + 63479 0.73 0.290906
Target:  5'- uUCCGCUGC--CGGCCGCcGGCGCCGg -3'
miRNA:   3'- cAGGUGGCGuaGUCGGUGcUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 49108 0.72 0.298143
Target:  5'- -aCCGCUGCcccacGUCAGCCGCGGcGCGCuCAa -3'
miRNA:   3'- caGGUGGCG-----UAGUCGGUGCU-UGCG-GU- -5'
30876 3' -57.1 NC_006552.1 + 51619 0.71 0.344492
Target:  5'- -aCgAUCGCGUCGaaCGCGAGCGCCAg -3'
miRNA:   3'- caGgUGGCGUAGUcgGUGCUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.