miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30876 3' -57.1 NC_006552.1 + 3970 0.67 0.574905
Target:  5'- --gUACCaGCAUCAGCCAUGcAGCGUg- -3'
miRNA:   3'- cagGUGG-CGUAGUCGGUGC-UUGCGgu -5'
30876 3' -57.1 NC_006552.1 + 18474 0.67 0.564235
Target:  5'- -aCCGCCGCAagCGccCCACGcACGCCGg -3'
miRNA:   3'- caGGUGGCGUa-GUc-GGUGCuUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 5293 0.67 0.564235
Target:  5'- aGUCgCGgCGCAUCgAGCUACc-GCGCCAg -3'
miRNA:   3'- -CAG-GUgGCGUAG-UCGGUGcuUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 30322 0.67 0.564235
Target:  5'- uUUCACUGgAUCGguuaugcguGCCGCGAaauaGCGCCAg -3'
miRNA:   3'- cAGGUGGCgUAGU---------CGGUGCU----UGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 20229 0.67 0.563171
Target:  5'- cUCCACgGCggucuuguaggcaGUCAGCUugGAGauaGCCGc -3'
miRNA:   3'- cAGGUGgCG-------------UAGUCGGugCUUg--CGGU- -5'
30876 3' -57.1 NC_006552.1 + 12731 0.67 0.553618
Target:  5'- uGUUC-CgGCGUCAgGCgCAUGAACGCCu -3'
miRNA:   3'- -CAGGuGgCGUAGU-CG-GUGCUUGCGGu -5'
30876 3' -57.1 NC_006552.1 + 36157 0.67 0.553618
Target:  5'- aUCgGCgGCAUCGGCgCugGccuCGCCAg -3'
miRNA:   3'- cAGgUGgCGUAGUCG-GugCuu-GCGGU- -5'
30876 3' -57.1 NC_006552.1 + 13909 0.67 0.553618
Target:  5'- -gCCGCCugcugaGCAUCGgugcguGCCACGAcaGCGCCc -3'
miRNA:   3'- caGGUGG------CGUAGU------CGGUGCU--UGCGGu -5'
30876 3' -57.1 NC_006552.1 + 62232 0.68 0.532571
Target:  5'- -aUCACCGaGUcCAGCCACGGaaucgcGCGCCu -3'
miRNA:   3'- caGGUGGCgUA-GUCGGUGCU------UGCGGu -5'
30876 3' -57.1 NC_006552.1 + 13778 0.68 0.532571
Target:  5'- uGUCCGCCuGCuugcuguUCAGuCCA-GAACGCCc -3'
miRNA:   3'- -CAGGUGG-CGu------AGUC-GGUgCUUGCGGu -5'
30876 3' -57.1 NC_006552.1 + 10138 0.68 0.511818
Target:  5'- cGUCCACCaaGUcgCGGCCguuGAACGUCAc -3'
miRNA:   3'- -CAGGUGG--CGuaGUCGGug-CUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 26830 0.69 0.491408
Target:  5'- uGUUCACCGCAUCacgcacauagAGCCuCGGGCucucGCCGc -3'
miRNA:   3'- -CAGGUGGCGUAG----------UCGGuGCUUG----CGGU- -5'
30876 3' -57.1 NC_006552.1 + 38766 0.69 0.485358
Target:  5'- uGUCCugCGCGuacuUCAuGCCGCgcacguagccguaugGAAUGCCAg -3'
miRNA:   3'- -CAGGugGCGU----AGU-CGGUG---------------CUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 26453 0.7 0.432629
Target:  5'- cUCCuggggGCCGCG-CAGCCACGccacagccGCGCCGu -3'
miRNA:   3'- cAGG-----UGGCGUaGUCGGUGCu-------UGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 55966 0.7 0.423233
Target:  5'- uUCCGCCGCuucacCGGCCGCgccGAAgGCCu -3'
miRNA:   3'- cAGGUGGCGua---GUCGGUG---CUUgCGGu -5'
30876 3' -57.1 NC_006552.1 + 13582 0.7 0.420438
Target:  5'- aUCCugCGCAUCAgGCUGCGGuccccgucuuccuuGCGCUg -3'
miRNA:   3'- cAGGugGCGUAGU-CGGUGCU--------------UGCGGu -5'
30876 3' -57.1 NC_006552.1 + 2000 0.7 0.386911
Target:  5'- ---gGCUGCAUCAGCCugGAucCGCUg -3'
miRNA:   3'- caggUGGCGUAGUCGGugCUu-GCGGu -5'
30876 3' -57.1 NC_006552.1 + 50491 0.71 0.369536
Target:  5'- -aUUACCGCGgaacaacCAGCCACG-GCGCCGg -3'
miRNA:   3'- caGGUGGCGUa------GUCGGUGCuUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 51619 0.71 0.344492
Target:  5'- -aCgAUCGCGUCGaaCGCGAGCGCCAg -3'
miRNA:   3'- caGgUGGCGUAGUcgGUGCUUGCGGU- -5'
30876 3' -57.1 NC_006552.1 + 49108 0.72 0.298143
Target:  5'- -aCCGCUGCcccacGUCAGCCGCGGcGCGCuCAa -3'
miRNA:   3'- caGGUGGCG-----UAGUCGGUGCU-UGCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.