miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30877 3' -59.7 NC_006552.1 + 40364 0.67 0.485617
Target:  5'- aCCAgauGGCGcaGCCaUCGCUGC-GGCCg -3'
miRNA:   3'- -GGUag-CCGUa-CGGaAGCGGCGgCCGG- -5'
30877 3' -59.7 NC_006552.1 + 21885 0.67 0.476884
Target:  5'- aCCAgcgCGGCAauggaUGCCccguccaccagcagCGCCuGCaCGGCCu -3'
miRNA:   3'- -GGUa--GCCGU-----ACGGaa------------GCGG-CG-GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 14418 0.67 0.475918
Target:  5'- aCCGU-GGCGcccUGCC--CGCUGCUGGCa -3'
miRNA:   3'- -GGUAgCCGU---ACGGaaGCGGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 3832 0.67 0.466317
Target:  5'- gCAUCGGUAUaCCUgaGCUGCCgaGGCUg -3'
miRNA:   3'- gGUAGCCGUAcGGAagCGGCGG--CCGG- -5'
30877 3' -59.7 NC_006552.1 + 3432 0.67 0.464409
Target:  5'- uUCAggGGCAcaccauguucccGCCUacgaacUCGCaCGCCGGCCc -3'
miRNA:   3'- -GGUagCCGUa-----------CGGA------AGCG-GCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 2070 0.68 0.456817
Target:  5'- gCGUCGuGCGcgGCCUgcugaucgaacUCGaCGCCGGCg -3'
miRNA:   3'- gGUAGC-CGUa-CGGA-----------AGCgGCGGCCGg -5'
30877 3' -59.7 NC_006552.1 + 14303 0.68 0.456817
Target:  5'- --uUCGGCGcggGCCUggGCC-UCGGCCu -3'
miRNA:   3'- gguAGCCGUa--CGGAagCGGcGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 14060 0.68 0.456817
Target:  5'- cUCAUCGGCGguuggcGCCcccugugUUGCgauacgGCCGGCCg -3'
miRNA:   3'- -GGUAGCCGUa-----CGGa------AGCGg-----CGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 13628 0.68 0.456817
Target:  5'- -uGUCGGCAcggGCCU--GCuCGgCGGCCu -3'
miRNA:   3'- ggUAGCCGUa--CGGAagCG-GCgGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 33748 0.68 0.455872
Target:  5'- gCCAgcgCGGCGgcggcauUGCUgUUGagcagaaCGCCGGCCg -3'
miRNA:   3'- -GGUa--GCCGU-------ACGGaAGCg------GCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 46119 0.68 0.454929
Target:  5'- aCGcCGaGCAgcuccgcUGCCUUCGCCuGCCccugcucGGCCa -3'
miRNA:   3'- gGUaGC-CGU-------ACGGAAGCGG-CGG-------CCGG- -5'
30877 3' -59.7 NC_006552.1 + 31400 0.68 0.448356
Target:  5'- aCCGUCGGCGgcgccgccaguggugGUCUUCGCgGugagagugaCCgGGCCa -3'
miRNA:   3'- -GGUAGCCGUa--------------CGGAAGCGgC---------GG-CCGG- -5'
30877 3' -59.7 NC_006552.1 + 11876 0.68 0.447422
Target:  5'- aUCGUCGGCGa-CCUUCuccaGgCGCgCGGCCa -3'
miRNA:   3'- -GGUAGCCGUacGGAAG----CgGCG-GCCGG- -5'
30877 3' -59.7 NC_006552.1 + 64535 0.68 0.447422
Target:  5'- aCCA--GGCAUcGcCCUUCcCCGCUGGCUc -3'
miRNA:   3'- -GGUagCCGUA-C-GGAAGcGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 11592 0.68 0.447422
Target:  5'- cCCAg-GGCcUGCaccagUUCGCCGCCGaacucGCCa -3'
miRNA:   3'- -GGUagCCGuACGg----AAGCGGCGGC-----CGG- -5'
30877 3' -59.7 NC_006552.1 + 4434 0.68 0.438135
Target:  5'- aCCAUcCGGCGUGCCcUUGaCCaaaGCCugguagacGGCCu -3'
miRNA:   3'- -GGUA-GCCGUACGGaAGC-GG---CGG--------CCGG- -5'
30877 3' -59.7 NC_006552.1 + 53590 0.68 0.428959
Target:  5'- ---gUGGCGccgGCCaguucggUGCCGCCGGCUg -3'
miRNA:   3'- gguaGCCGUa--CGGaa-----GCGGCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 20521 0.68 0.419898
Target:  5'- --uUCGGCc-GCCUUCa--GCCGGCCu -3'
miRNA:   3'- gguAGCCGuaCGGAAGcggCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 43217 0.68 0.419898
Target:  5'- uUCAUCuGGCcgGUUUUCa--GCCGGCCa -3'
miRNA:   3'- -GGUAG-CCGuaCGGAAGcggCGGCCGG- -5'
30877 3' -59.7 NC_006552.1 + 9713 0.68 0.413625
Target:  5'- -uGUCGGCAUccuugacGCUggCGCgauucaucagcauggCGCCGGCCu -3'
miRNA:   3'- ggUAGCCGUA-------CGGaaGCG---------------GCGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.