miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30877 5' -52.7 NC_006552.1 + 54572 0.66 0.843239
Target:  5'- -uGAUCGugGACAccGCCacggcgaAGGCCGc- -3'
miRNA:   3'- guCUAGCugUUGUuaCGG-------UCCGGCua -5'
30877 5' -52.7 NC_006552.1 + 64800 0.66 0.835159
Target:  5'- cCGGAaaCGGCGuuuccgGCCGGGCCGGUa -3'
miRNA:   3'- -GUCUa-GCUGUuguua-CGGUCCGGCUA- -5'
30877 5' -52.7 NC_006552.1 + 61494 0.67 0.806963
Target:  5'- -cGGUCGACuACGugcgcGcCCGGGCCGAg -3'
miRNA:   3'- guCUAGCUGuUGUua---C-GGUCCGGCUa -5'
30877 5' -52.7 NC_006552.1 + 19398 0.67 0.777049
Target:  5'- cCGGAgcaUGAUc-CAGUGCCAGGCCGc- -3'
miRNA:   3'- -GUCUa--GCUGuuGUUACGGUCCGGCua -5'
30877 5' -52.7 NC_006552.1 + 39710 0.68 0.766749
Target:  5'- --uGUCGGCGACGGcucGCCAGGCgGGc -3'
miRNA:   3'- gucUAGCUGUUGUUa--CGGUCCGgCUa -5'
30877 5' -52.7 NC_006552.1 + 61753 0.68 0.735031
Target:  5'- --cAUCGAcCAGC-AUGCCAGGCCu-- -3'
miRNA:   3'- gucUAGCU-GUUGuUACGGUCCGGcua -5'
30877 5' -52.7 NC_006552.1 + 62108 0.68 0.723141
Target:  5'- gCAGAUCGGCGucgaggccaagcuGCAGUugaacGCCAagguGGCCGAc -3'
miRNA:   3'- -GUCUAGCUGU-------------UGUUA-----CGGU----CCGGCUa -5'
30877 5' -52.7 NC_006552.1 + 3200 0.69 0.691289
Target:  5'- gCAGAUCGACAcuucCAcUGCCuGGCCc-- -3'
miRNA:   3'- -GUCUAGCUGUu---GUuACGGuCCGGcua -5'
30877 5' -52.7 NC_006552.1 + 58409 0.7 0.645469
Target:  5'- -cGAagGGCAGCAaccgcgaGUGCCAGGCCu-- -3'
miRNA:   3'- guCUagCUGUUGU-------UACGGUCCGGcua -5'
30877 5' -52.7 NC_006552.1 + 53445 0.71 0.57933
Target:  5'- aCAGGUCGcgcuuccccGCAACAAgcUGCCGaccuuGGCCGAg -3'
miRNA:   3'- -GUCUAGC---------UGUUGUU--ACGGU-----CCGGCUa -5'
30877 5' -52.7 NC_006552.1 + 33554 0.71 0.546184
Target:  5'- -cGGcCGACAGCAGcagGCCAGcGCCGAa -3'
miRNA:   3'- guCUaGCUGUUGUUa--CGGUC-CGGCUa -5'
30877 5' -52.7 NC_006552.1 + 42716 0.73 0.471616
Target:  5'- gCGGAUCGAacuGCGGUGCCGGuaCGAa -3'
miRNA:   3'- -GUCUAGCUgu-UGUUACGGUCcgGCUa -5'
30877 5' -52.7 NC_006552.1 + 28308 0.73 0.461375
Target:  5'- uGGAUCGACAGagccGCCAGGCCc-- -3'
miRNA:   3'- gUCUAGCUGUUguuaCGGUCCGGcua -5'
30877 5' -52.7 NC_006552.1 + 47641 0.74 0.402556
Target:  5'- gAGAgUCGGCAGCAAaGCguGGCCGGc -3'
miRNA:   3'- gUCU-AGCUGUUGUUaCGguCCGGCUa -5'
30877 5' -52.7 NC_006552.1 + 28110 0.74 0.384032
Target:  5'- -cGGUCGGCGAUcuuUGCCuGGCCGAa -3'
miRNA:   3'- guCUAGCUGUUGuu-ACGGuCCGGCUa -5'
30877 5' -52.7 NC_006552.1 + 39593 0.75 0.374985
Target:  5'- gUAGG--GACAACAGcGCCGGGCCGAUc -3'
miRNA:   3'- -GUCUagCUGUUGUUaCGGUCCGGCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.