Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30877 | 5' | -52.7 | NC_006552.1 | + | 54572 | 0.66 | 0.843239 |
Target: 5'- -uGAUCGugGACAccGCCacggcgaAGGCCGc- -3' miRNA: 3'- guCUAGCugUUGUuaCGG-------UCCGGCua -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 64800 | 0.66 | 0.835159 |
Target: 5'- cCGGAaaCGGCGuuuccgGCCGGGCCGGUa -3' miRNA: 3'- -GUCUa-GCUGUuguua-CGGUCCGGCUA- -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 61494 | 0.67 | 0.806963 |
Target: 5'- -cGGUCGACuACGugcgcGcCCGGGCCGAg -3' miRNA: 3'- guCUAGCUGuUGUua---C-GGUCCGGCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 19398 | 0.67 | 0.777049 |
Target: 5'- cCGGAgcaUGAUc-CAGUGCCAGGCCGc- -3' miRNA: 3'- -GUCUa--GCUGuuGUUACGGUCCGGCua -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 39710 | 0.68 | 0.766749 |
Target: 5'- --uGUCGGCGACGGcucGCCAGGCgGGc -3' miRNA: 3'- gucUAGCUGUUGUUa--CGGUCCGgCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 61753 | 0.68 | 0.735031 |
Target: 5'- --cAUCGAcCAGC-AUGCCAGGCCu-- -3' miRNA: 3'- gucUAGCU-GUUGuUACGGUCCGGcua -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 62108 | 0.68 | 0.723141 |
Target: 5'- gCAGAUCGGCGucgaggccaagcuGCAGUugaacGCCAagguGGCCGAc -3' miRNA: 3'- -GUCUAGCUGU-------------UGUUA-----CGGU----CCGGCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 3200 | 0.69 | 0.691289 |
Target: 5'- gCAGAUCGACAcuucCAcUGCCuGGCCc-- -3' miRNA: 3'- -GUCUAGCUGUu---GUuACGGuCCGGcua -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 58409 | 0.7 | 0.645469 |
Target: 5'- -cGAagGGCAGCAaccgcgaGUGCCAGGCCu-- -3' miRNA: 3'- guCUagCUGUUGU-------UACGGUCCGGcua -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 53445 | 0.71 | 0.57933 |
Target: 5'- aCAGGUCGcgcuuccccGCAACAAgcUGCCGaccuuGGCCGAg -3' miRNA: 3'- -GUCUAGC---------UGUUGUU--ACGGU-----CCGGCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 33554 | 0.71 | 0.546184 |
Target: 5'- -cGGcCGACAGCAGcagGCCAGcGCCGAa -3' miRNA: 3'- guCUaGCUGUUGUUa--CGGUC-CGGCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 42716 | 0.73 | 0.471616 |
Target: 5'- gCGGAUCGAacuGCGGUGCCGGuaCGAa -3' miRNA: 3'- -GUCUAGCUgu-UGUUACGGUCcgGCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 28308 | 0.73 | 0.461375 |
Target: 5'- uGGAUCGACAGagccGCCAGGCCc-- -3' miRNA: 3'- gUCUAGCUGUUguuaCGGUCCGGcua -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 47641 | 0.74 | 0.402556 |
Target: 5'- gAGAgUCGGCAGCAAaGCguGGCCGGc -3' miRNA: 3'- gUCU-AGCUGUUGUUaCGguCCGGCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 28110 | 0.74 | 0.384032 |
Target: 5'- -cGGUCGGCGAUcuuUGCCuGGCCGAa -3' miRNA: 3'- guCUAGCUGUUGuu-ACGGuCCGGCUa -5' |
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30877 | 5' | -52.7 | NC_006552.1 | + | 39593 | 0.75 | 0.374985 |
Target: 5'- gUAGG--GACAACAGcGCCGGGCCGAUc -3' miRNA: 3'- -GUCUagCUGUUGUUaCGGUCCGGCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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