miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30878 5' -55.9 NC_006552.1 + 55684 0.66 0.714243
Target:  5'- cUGCCaggaaGGGGUCGAucGCcgGgcgAgACGCGCa -3'
miRNA:   3'- -ACGGg----CUCCAGUU--CGa-Ca--UgUGCGCG- -5'
30878 5' -55.9 NC_006552.1 + 28836 0.66 0.713185
Target:  5'- cUGUCCG-GGUCGuacuccuGGaccacGUACugGCGCa -3'
miRNA:   3'- -ACGGGCuCCAGU-------UCga---CAUGugCGCG- -5'
30878 5' -55.9 NC_006552.1 + 26336 0.66 0.692957
Target:  5'- cGCUCGc-GUCAGGUagagGCGCGCGCc -3'
miRNA:   3'- aCGGGCucCAGUUCGaca-UGUGCGCG- -5'
30878 5' -55.9 NC_006552.1 + 59026 0.66 0.689742
Target:  5'- cGCCCucaucGAGuaCAAGCUGUcacccgaacacgagGCugGCGCu -3'
miRNA:   3'- aCGGG-----CUCcaGUUCGACA--------------UGugCGCG- -5'
30878 5' -55.9 NC_006552.1 + 14286 0.67 0.671442
Target:  5'- uUGCCgGGGGUgAAGUauucgGCGCGgGCc -3'
miRNA:   3'- -ACGGgCUCCAgUUCGaca--UGUGCgCG- -5'
30878 5' -55.9 NC_006552.1 + 39791 0.67 0.660625
Target:  5'- cGCCCGcAGGUggCAAGCcGUucaaauACugGCGg -3'
miRNA:   3'- aCGGGC-UCCA--GUUCGaCA------UGugCGCg -5'
30878 5' -55.9 NC_006552.1 + 22385 0.67 0.638924
Target:  5'- aGCCCGuacagcaccGUCucGCUGaUGCGCGCGg -3'
miRNA:   3'- aCGGGCuc-------CAGuuCGAC-AUGUGCGCg -5'
30878 5' -55.9 NC_006552.1 + 50156 0.67 0.62806
Target:  5'- cGCCCu-GGagCAGGC-GUACuGCGCGCu -3'
miRNA:   3'- aCGGGcuCCa-GUUCGaCAUG-UGCGCG- -5'
30878 5' -55.9 NC_006552.1 + 20433 0.68 0.57397
Target:  5'- cUGCUCGAGGgcCAGGCccUGcUGCACG-GCg -3'
miRNA:   3'- -ACGGGCUCCa-GUUCG--AC-AUGUGCgCG- -5'
30878 5' -55.9 NC_006552.1 + 27613 0.69 0.510655
Target:  5'- aUGCCC-AGGUagguGCUG-AUGCGCGCc -3'
miRNA:   3'- -ACGGGcUCCAguu-CGACaUGUGCGCG- -5'
30878 5' -55.9 NC_006552.1 + 11055 0.7 0.490179
Target:  5'- gGCCgCcGGGcuucagCAGGCUGUAgGCGUGCu -3'
miRNA:   3'- aCGG-GcUCCa-----GUUCGACAUgUGCGCG- -5'
30878 5' -55.9 NC_006552.1 + 29889 0.7 0.490179
Target:  5'- cGCCCGuGGUCAuAGCUacuccaGCACGaUGCg -3'
miRNA:   3'- aCGGGCuCCAGU-UCGAca----UGUGC-GCG- -5'
30878 5' -55.9 NC_006552.1 + 34232 0.72 0.394329
Target:  5'- cGCUCGAcucGGcuucCGAGUUGUACGCgGCGCa -3'
miRNA:   3'- aCGGGCU---CCa---GUUCGACAUGUG-CGCG- -5'
30878 5' -55.9 NC_006552.1 + 38560 0.72 0.394329
Target:  5'- aUGCUgGucGGUCAGGgUGUAguCGCGCu -3'
miRNA:   3'- -ACGGgCu-CCAGUUCgACAUguGCGCG- -5'
30878 5' -55.9 NC_006552.1 + 34874 0.72 0.351169
Target:  5'- cGCCC-AGGUCcaccgggaagcGGGCUugGUugACGCGCa -3'
miRNA:   3'- aCGGGcUCCAG-----------UUCGA--CAugUGCGCG- -5'
30878 5' -55.9 NC_006552.1 + 8413 0.73 0.319129
Target:  5'- cUGCUCGGGGcUCAGGCcGcGCcagGCGCGCa -3'
miRNA:   3'- -ACGGGCUCC-AGUUCGaCaUG---UGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.