miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30879 3' -60.4 NC_006552.1 + 33395 0.66 0.544887
Target:  5'- aGGGCGgCGGcgcuuagacuGCGcCGAGGcgcucGCCGugGa -3'
miRNA:   3'- -CCCGCgGCC----------UGUaGCUCCu----CGGCugC- -5'
30879 3' -60.4 NC_006552.1 + 25225 0.66 0.505032
Target:  5'- cGGCGCCGuuGACGUUGAGcugcGAcGCUGugGc -3'
miRNA:   3'- cCCGCGGC--CUGUAGCUC----CU-CGGCugC- -5'
30879 3' -60.4 NC_006552.1 + 51909 0.67 0.495261
Target:  5'- -uGCGCCGccGCAUgGAGGAGCaaGACGc -3'
miRNA:   3'- ccCGCGGCc-UGUAgCUCCUCGg-CUGC- -5'
30879 3' -60.4 NC_006552.1 + 26715 0.67 0.485577
Target:  5'- aGGGCGCCGaaGGCGUCGccgugcaguGGGcuuugccagAGuuGGCGg -3'
miRNA:   3'- -CCCGCGGC--CUGUAGC---------UCC---------UCggCUGC- -5'
30879 3' -60.4 NC_006552.1 + 22217 0.68 0.438598
Target:  5'- aGGGUGCCGGugAcgCGAuccgcuGCCGugGc -3'
miRNA:   3'- -CCCGCGGCCugUa-GCUccu---CGGCugC- -5'
30879 3' -60.4 NC_006552.1 + 60912 0.68 0.438598
Target:  5'- cGGGCGgacgaGGAUAUCcgcgaucuuaugGAGGAGCCGGg- -3'
miRNA:   3'- -CCCGCgg---CCUGUAG------------CUCCUCGGCUgc -5'
30879 3' -60.4 NC_006552.1 + 27306 0.68 0.394328
Target:  5'- cGGGaauCCGGuCAUCu-GGAGUCGACGa -3'
miRNA:   3'- -CCCgc-GGCCuGUAGcuCCUCGGCUGC- -5'
30879 3' -60.4 NC_006552.1 + 58626 0.69 0.389213
Target:  5'- -cGCGCCGGGCAgacugaaccgcgacCGGGcgacGAGCCGAUGu -3'
miRNA:   3'- ccCGCGGCCUGUa-------------GCUC----CUCGGCUGC- -5'
30879 3' -60.4 NC_006552.1 + 51511 0.69 0.377448
Target:  5'- aGGCGCCuuACAUCGAGGcaGGCCaGAUc -3'
miRNA:   3'- cCCGCGGccUGUAGCUCC--UCGG-CUGc -5'
30879 3' -60.4 NC_006552.1 + 60341 0.78 0.098245
Target:  5'- --aUGCCGGACAUUGAGuGGCCGGCGa -3'
miRNA:   3'- cccGCGGCCUGUAGCUCcUCGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.