miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30879 5' -54.3 NC_006552.1 + 2078 0.68 0.693519
Target:  5'- cGCGgccugcugaucGAAC-UCGACGCCGGCggCAc -3'
miRNA:   3'- cCGCa----------CUUGuAGCUGCGGCCGuaGUu -5'
30879 5' -54.3 NC_006552.1 + 33758 0.66 0.816019
Target:  5'- cGGCGgcauugcuguUGAGCAga-ACGCCGGCcgCGu -3'
miRNA:   3'- -CCGC----------ACUUGUagcUGCGGCCGuaGUu -5'
30879 5' -54.3 NC_006552.1 + 31992 0.66 0.806613
Target:  5'- cGGCGUGAAUcucCGGCuGCgCGGUGUCc- -3'
miRNA:   3'- -CCGCACUUGua-GCUG-CG-GCCGUAGuu -5'
30879 5' -54.3 NC_006552.1 + 59011 0.66 0.806613
Target:  5'- cGGCGccGAGCAUC-ACGCCcuCAUCGAg -3'
miRNA:   3'- -CCGCa-CUUGUAGcUGCGGccGUAGUU- -5'
30879 5' -54.3 NC_006552.1 + 27856 0.67 0.76727
Target:  5'- -cCGUccACcUUGAUGCCGGCGUCGAu -3'
miRNA:   3'- ccGCAcuUGuAGCUGCGGCCGUAGUU- -5'
30879 5' -54.3 NC_006552.1 + 36064 0.67 0.766255
Target:  5'- aGGCGUcuuGCccuguugGUCGccaccagccgaaGCGCCGGCGUCAc -3'
miRNA:   3'- -CCGCAcu-UG-------UAGC------------UGCGGCCGUAGUu -5'
30879 5' -54.3 NC_006552.1 + 10850 0.67 0.75706
Target:  5'- cGGCGcUGccGACucuUCGGCuGCCGGCuuGUCGAu -3'
miRNA:   3'- -CCGC-AC--UUGu--AGCUG-CGGCCG--UAGUU- -5'
30879 5' -54.3 NC_006552.1 + 59586 0.67 0.75706
Target:  5'- cGGCGUGGAgcUgGAC-CCGGC-UCAAg -3'
miRNA:   3'- -CCGCACUUguAgCUGcGGCCGuAGUU- -5'
30879 5' -54.3 NC_006552.1 + 49716 0.67 0.746721
Target:  5'- cGGUGcUGAugAUCGAgGaaGGCAUUAc -3'
miRNA:   3'- -CCGC-ACUugUAGCUgCggCCGUAGUu -5'
30879 5' -54.3 NC_006552.1 + 24246 0.68 0.703246
Target:  5'- cGGCG-GAacGCAUCGGuugugguCGCCGGCAc--- -3'
miRNA:   3'- -CCGCaCU--UGUAGCU-------GCGGCCGUaguu -5'
30879 5' -54.3 NC_006552.1 + 34614 0.76 0.286044
Target:  5'- cGGCGcaacgccagUGAugGCAUCGGCGCUGGCAaCGAa -3'
miRNA:   3'- -CCGC---------ACU--UGUAGCUGCGGCCGUaGUU- -5'
30879 5' -54.3 NC_006552.1 + 60871 0.68 0.693519
Target:  5'- uGGacugaGUGAACAUgugcggcgcacCGGCGCUGGCAuaUCGGg -3'
miRNA:   3'- -CCg----CACUUGUA-----------GCUGCGGCCGU--AGUU- -5'
30879 5' -54.3 NC_006552.1 + 22599 0.68 0.671745
Target:  5'- uGGCGUaccGGGCGUCGccgauggcgacAUGCaCGGCGUCGc -3'
miRNA:   3'- -CCGCA---CUUGUAGC-----------UGCG-GCCGUAGUu -5'
30879 5' -54.3 NC_006552.1 + 20827 0.69 0.627834
Target:  5'- cGGCGUG-GCGUCGaACGuaGGCAacUCGGg -3'
miRNA:   3'- -CCGCACuUGUAGC-UGCggCCGU--AGUU- -5'
30879 5' -54.3 NC_006552.1 + 31505 0.69 0.594903
Target:  5'- cGGCGUGuAU----GCGCCGGUAUCGAc -3'
miRNA:   3'- -CCGCACuUGuagcUGCGGCCGUAGUU- -5'
30879 5' -54.3 NC_006552.1 + 50496 0.7 0.583977
Target:  5'- cGCG-GAACAaccagccaCGGCGCCGGCAgccgUCAAg -3'
miRNA:   3'- cCGCaCUUGUa-------GCUGCGGCCGU----AGUU- -5'
30879 5' -54.3 NC_006552.1 + 2052 0.71 0.530107
Target:  5'- aGGCGcuUGAGC----GCGCCGGCGUCGu -3'
miRNA:   3'- -CCGC--ACUUGuagcUGCGGCCGUAGUu -5'
30879 5' -54.3 NC_006552.1 + 19725 0.71 0.488357
Target:  5'- cGGCGUcGGccACGUUGGCGCUGGCcgCu- -3'
miRNA:   3'- -CCGCA-CU--UGUAGCUGCGGCCGuaGuu -5'
30879 5' -54.3 NC_006552.1 + 36159 0.73 0.382656
Target:  5'- cGGCG---GCAUCGGCGCUGGCcUCGc -3'
miRNA:   3'- -CCGCacuUGUAGCUGCGGCCGuAGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.