Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30883 | 3' | -56.4 | NC_006552.1 | + | 2034 | 0.67 | 0.609088 |
Target: 5'- cCUAUCUGCGCcuggGAcaggcgcuUGAGCGCgcCGGCg -3' miRNA: 3'- -GGUGGACGUG----CU--------ACUCGCGauGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 2908 | 0.66 | 0.673847 |
Target: 5'- aUCACC-GC-CGAU-AGCGCcgGCGGCa -3' miRNA: 3'- -GGUGGaCGuGCUAcUCGCGa-UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 4804 | 0.69 | 0.533449 |
Target: 5'- cCCACCUGCggcggggGCGAUGcgcacGCGCacaggGCGGUc -3' miRNA: 3'- -GGUGGACG-------UGCUACu----CGCGa----UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 5131 | 0.67 | 0.609088 |
Target: 5'- gCACCUGCACGgcGAugcauuGCGCaUGCcGCUc -3' miRNA: 3'- gGUGGACGUGCuaCU------CGCG-AUGcCGA- -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 8132 | 0.67 | 0.609088 |
Target: 5'- gCCAUCUGCGCcaGGUGGucGCGCaguaucGCGGCc -3' miRNA: 3'- -GGUGGACGUG--CUACU--CGCGa-----UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 9153 | 0.66 | 0.705845 |
Target: 5'- gUCAcCCUGCGCGu--AGcCGCUcGCGGCa -3' miRNA: 3'- -GGU-GGACGUGCuacUC-GCGA-UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 10759 | 0.66 | 0.702669 |
Target: 5'- gCugCUGCGCGGUgcucagggcaugcaGAuugGCGCcgACGGCa -3' miRNA: 3'- gGugGACGUGCUA--------------CU---CGCGa-UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 14006 | 0.66 | 0.695235 |
Target: 5'- gCugCUGCuguuCGAgauaccgGAGUagcugGCUGCGGCUu -3' miRNA: 3'- gGugGACGu---GCUa------CUCG-----CGAUGCCGA- -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 14652 | 0.67 | 0.630695 |
Target: 5'- uCCGCCUGCGuCGGuuUGAGgGUaucUGCGGg- -3' miRNA: 3'- -GGUGGACGU-GCU--ACUCgCG---AUGCCga -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 15326 | 0.68 | 0.555551 |
Target: 5'- cCCACCUcuccgcgacGCACGGccUGcAGCGCcGCaGGCUg -3' miRNA: 3'- -GGUGGA---------CGUGCU--AC-UCGCGaUG-CCGA- -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 20057 | 0.7 | 0.463378 |
Target: 5'- aCGCCUGCACGucu-GCGCgguaGGCg -3' miRNA: 3'- gGUGGACGUGCuacuCGCGaug-CCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 20449 | 0.67 | 0.630695 |
Target: 5'- cCCugCUGCACGgcGAaGCGCa--GGUUc -3' miRNA: 3'- -GGugGACGUGCuaCU-CGCGaugCCGA- -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 20679 | 0.79 | 0.126315 |
Target: 5'- gCGCCUGCuCGAUGGGCGC--CGGCa -3' miRNA: 3'- gGUGGACGuGCUACUCGCGauGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 24549 | 0.67 | 0.652307 |
Target: 5'- aCCACCUGCAUGAcuucaGCcAUGGCa -3' miRNA: 3'- -GGUGGACGUGCUacucgCGaUGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 24924 | 0.66 | 0.684565 |
Target: 5'- aCCGCCUGC-CGAccgcUGGgcagaucccaacGCGCUucaGGCUg -3' miRNA: 3'- -GGUGGACGuGCU----ACU------------CGCGAug-CCGA- -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 26070 | 0.73 | 0.292363 |
Target: 5'- aCCGgCUGCACGAagGuuauGCGCUGgGGCa -3' miRNA: 3'- -GGUgGACGUGCUa-Cu---CGCGAUgCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 27993 | 0.66 | 0.673847 |
Target: 5'- aCCGCCUGaucaacCAUGAUGuucugcGGCGagUACGGCg -3' miRNA: 3'- -GGUGGAC------GUGCUAC------UCGCg-AUGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 32199 | 0.7 | 0.483222 |
Target: 5'- gCACCgGCAUGGUcGGGCGCgacauauCGGCc -3' miRNA: 3'- gGUGGaCGUGCUA-CUCGCGau-----GCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 32481 | 0.72 | 0.362708 |
Target: 5'- gCCACCgaacUGguCGAUGcGCGCguggACGGCa -3' miRNA: 3'- -GGUGG----ACguGCUACuCGCGa---UGCCGa -5' |
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30883 | 3' | -56.4 | NC_006552.1 | + | 35642 | 0.68 | 0.576842 |
Target: 5'- -gGCCUcguagaucGCAUucaGGUGGGCGCUcGCGGCg -3' miRNA: 3'- ggUGGA--------CGUG---CUACUCGCGA-UGCCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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