miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30884 3' -56.6 NC_006552.1 + 64437 0.66 0.658871
Target:  5'- --------cGCCGCCcucGGCCUGGCCGu -3'
miRNA:   3'- uuucuuuacCGGCGG---CUGGACCGGUg -5'
30884 3' -56.6 NC_006552.1 + 29796 0.66 0.658871
Target:  5'- -cAGGAA-GGUuCGCCGGCg-GGCCGCc -3'
miRNA:   3'- uuUCUUUaCCG-GCGGCUGgaCCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 2769 0.66 0.658871
Target:  5'- cGAGuGGGUGGCCGagGGCg-GGCCGCg -3'
miRNA:   3'- uUUC-UUUACCGGCggCUGgaCCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 58172 0.66 0.658871
Target:  5'- cAAGAGuaucuucGGCCGCaagaaGGcCCUGGCCGa -3'
miRNA:   3'- uUUCUUua-----CCGGCGg----CU-GGACCGGUg -5'
30884 3' -56.6 NC_006552.1 + 33834 0.66 0.636884
Target:  5'- --cGgcGUGaaaCCGCCGAaCUGGCCGCc -3'
miRNA:   3'- uuuCuuUACc--GGCGGCUgGACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 34130 0.66 0.636884
Target:  5'- --cGGAGUGcucggauGCCGCCcaggcuugcgccagaGCCUGGCCGCc -3'
miRNA:   3'- uuuCUUUAC-------CGGCGGc--------------UGGACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 53468 0.66 0.625879
Target:  5'- --------aGCUGCCGACCUuGGCCGa -3'
miRNA:   3'- uuucuuuacCGGCGGCUGGA-CCGGUg -5'
30884 3' -56.6 NC_006552.1 + 20688 0.66 0.625879
Target:  5'- ----cGAUGGgCGCCGGcaguCCUGuGCCGCc -3'
miRNA:   3'- uuucuUUACCgGCGGCU----GGAC-CGGUG- -5'
30884 3' -56.6 NC_006552.1 + 52177 0.68 0.517591
Target:  5'- --------cGCCGCCaucgccgaaGGCCUGGCCACc -3'
miRNA:   3'- uuucuuuacCGGCGG---------CUGGACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 9567 0.69 0.446355
Target:  5'- cAGGAAAcGGCUGUCGGcgaacugauggcCCUGGCUGCg -3'
miRNA:   3'- uUUCUUUaCCGGCGGCU------------GGACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 54003 0.71 0.37211
Target:  5'- -----cGUGGCC-CUGGcCCUGGCCGCg -3'
miRNA:   3'- uuucuuUACCGGcGGCU-GGACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 45205 0.73 0.263717
Target:  5'- ------uUGGCgCGUCGGCCUGGcCCACa -3'
miRNA:   3'- uuucuuuACCG-GCGGCUGGACC-GGUG- -5'
30884 3' -56.6 NC_006552.1 + 63992 0.75 0.203067
Target:  5'- ------cUGGCCGCCaagGGCCUGGCCGg -3'
miRNA:   3'- uuucuuuACCGGCGG---CUGGACCGGUg -5'
30884 3' -56.6 NC_006552.1 + 29065 0.76 0.163173
Target:  5'- cAAGAAGcgcGuGCCGCCGACCauaggucUGGCCACg -3'
miRNA:   3'- uUUCUUUa--C-CGGCGGCUGG-------ACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 21797 0.77 0.134903
Target:  5'- ------cUGGCCGCCGuCCUGGUCGCc -3'
miRNA:   3'- uuucuuuACCGGCGGCuGGACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 61673 0.79 0.101873
Target:  5'- ------cUGGCCGCCgcacgGACCUGGCCGCu -3'
miRNA:   3'- uuucuuuACCGGCGG-----CUGGACCGGUG- -5'
30884 3' -56.6 NC_006552.1 + 63016 0.81 0.070236
Target:  5'- uGGAGaAAAUGGCCGCCcagcgcaACCUGGCCGCc -3'
miRNA:   3'- -UUUC-UUUACCGGCGGc------UGGACCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.