miRNA display CGI


Results 1 - 20 of 26 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30884 5' -48.8 NC_006552.1 + 55925 0.65 0.97955
Target:  5'- -uGUCGCCGGAGAuccCGGCGgacaagcgcaCCUUCa -3'
miRNA:   3'- ugUAGUGGCUUUU---GCCGUaac-------GGAAG- -5'
30884 5' -48.8 NC_006552.1 + 62546 0.66 0.977485
Target:  5'- -gAUCGCCGAAuGCGGCGUcaGCg--- -3'
miRNA:   3'- ugUAGUGGCUUuUGCCGUAa-CGgaag -5'
30884 5' -48.8 NC_006552.1 + 19550 0.66 0.974694
Target:  5'- gACAgagCGCCGGccgcuagcuGAGCGGUGUacugccccaggGCCUUCg -3'
miRNA:   3'- -UGUa--GUGGCU---------UUUGCCGUAa----------CGGAAG- -5'
30884 5' -48.8 NC_006552.1 + 31391 0.66 0.971659
Target:  5'- cACAUCcgcACCGucGGCGGCGccGCCa-- -3'
miRNA:   3'- -UGUAG---UGGCuuUUGCCGUaaCGGaag -5'
30884 5' -48.8 NC_006552.1 + 17535 0.66 0.968371
Target:  5'- --uUCGgCGAucGCGGCGcgGUCUUCg -3'
miRNA:   3'- uguAGUgGCUuuUGCCGUaaCGGAAG- -5'
30884 5' -48.8 NC_006552.1 + 61598 0.67 0.96482
Target:  5'- uACGUCGCCuacGAcagggacugGGACGGCAacUGCCUg- -3'
miRNA:   3'- -UGUAGUGG---CU---------UUUGCCGUa-ACGGAag -5'
30884 5' -48.8 NC_006552.1 + 39537 0.67 0.96482
Target:  5'- cACGUCGCCGuu--CGGCGUcacccGCCa-- -3'
miRNA:   3'- -UGUAGUGGCuuuuGCCGUAa----CGGaag -5'
30884 5' -48.8 NC_006552.1 + 29743 0.67 0.960999
Target:  5'- gGCAUCGCgCGAGAGCaGCGgugGCUg-- -3'
miRNA:   3'- -UGUAGUG-GCUUUUGcCGUaa-CGGaag -5'
30884 5' -48.8 NC_006552.1 + 33438 0.67 0.958573
Target:  5'- -gAUCACCugGAGcuugcccgccuccgcGACGGCAgcGCCUUUg -3'
miRNA:   3'- ugUAGUGG--CUU---------------UUGCCGUaaCGGAAG- -5'
30884 5' -48.8 NC_006552.1 + 28578 0.67 0.952516
Target:  5'- cUcgCGCCGuuguAGACGGCA-UGCCaaUUCa -3'
miRNA:   3'- uGuaGUGGCu---UUUGCCGUaACGG--AAG- -5'
30884 5' -48.8 NC_006552.1 + 10631 0.67 0.952516
Target:  5'- aGCAgucUCACCGGccACGGCGaUGCUg-- -3'
miRNA:   3'- -UGU---AGUGGCUuuUGCCGUaACGGaag -5'
30884 5' -48.8 NC_006552.1 + 61128 0.67 0.947843
Target:  5'- gACAUCAgCGAAGAgcaGGCGUUGgCa-- -3'
miRNA:   3'- -UGUAGUgGCUUUUg--CCGUAACgGaag -5'
30884 5' -48.8 NC_006552.1 + 59279 0.68 0.937608
Target:  5'- uACAUCAUCGAccgcggcgcuGACGGCAa-GCCgUUCa -3'
miRNA:   3'- -UGUAGUGGCUu---------UUGCCGUaaCGG-AAG- -5'
30884 5' -48.8 NC_006552.1 + 40459 0.68 0.932041
Target:  5'- aGCGUCGCCauguccuUGGCGUaccaguUGCCUUCc -3'
miRNA:   3'- -UGUAGUGGcuuuu--GCCGUA------ACGGAAG- -5'
30884 5' -48.8 NC_006552.1 + 10838 0.68 0.920001
Target:  5'- --uUCGCCGGGcuGCGGCGcUGCCg-- -3'
miRNA:   3'- uguAGUGGCUUu-UGCCGUaACGGaag -5'
30884 5' -48.8 NC_006552.1 + 9358 0.68 0.920001
Target:  5'- aGCGUCugCGu--ACGGCugaaUGCCUg- -3'
miRNA:   3'- -UGUAGugGCuuuUGCCGua--ACGGAag -5'
30884 5' -48.8 NC_006552.1 + 11713 0.69 0.899684
Target:  5'- cGCGuuUCACCGGAagcacGAUGGCcUUGCCg-- -3'
miRNA:   3'- -UGU--AGUGGCUU-----UUGCCGuAACGGaag -5'
30884 5' -48.8 NC_006552.1 + 63091 0.7 0.842309
Target:  5'- cCGUCGCCGAGAACuGCcgUGCg--- -3'
miRNA:   3'- uGUAGUGGCUUUUGcCGuaACGgaag -5'
30884 5' -48.8 NC_006552.1 + 3254 0.71 0.833076
Target:  5'- cGCAgugCGCCGGAggucguucgaaGACGGCGcgaaagUGCUUUCa -3'
miRNA:   3'- -UGUa--GUGGCUU-----------UUGCCGUa-----ACGGAAG- -5'
30884 5' -48.8 NC_006552.1 + 26954 0.71 0.823612
Target:  5'- uGCggUACUGAu--CGGCGUUGCCgUCa -3'
miRNA:   3'- -UGuaGUGGCUuuuGCCGUAACGGaAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.