miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30885 5' -56.1 NC_006552.1 + 1023 0.66 0.686775
Target:  5'- -cGCC-UCGUCACGGCGcUGCcgggcaucacgcaGGCUCa -3'
miRNA:   3'- auUGGuAGCGGUGUCGCaGCG-------------UCGAG- -5'
30885 5' -56.1 NC_006552.1 + 10556 0.66 0.655008
Target:  5'- gAGCaCAUCGCCuACAGUcgGUCGaCuacGCUCg -3'
miRNA:   3'- aUUG-GUAGCGG-UGUCG--CAGC-Gu--CGAG- -5'
30885 5' -56.1 NC_006552.1 + 32962 0.66 0.655008
Target:  5'- cAGCCAcgcgCGCguCGGCGUCcUGGCUCc -3'
miRNA:   3'- aUUGGUa---GCGguGUCGCAGcGUCGAG- -5'
30885 5' -56.1 NC_006552.1 + 11916 0.66 0.642898
Target:  5'- aGGCCGUccacgucCGCCAUcuGGCG-CGCcaGGCUCg -3'
miRNA:   3'- aUUGGUA-------GCGGUG--UCGCaGCG--UCGAG- -5'
30885 5' -56.1 NC_006552.1 + 2582 0.67 0.631878
Target:  5'- cGGCCGUgacgaCGCUACGgcucgaaggcgauGCGcUCGUAGCUCa -3'
miRNA:   3'- aUUGGUA-----GCGGUGU-------------CGC-AGCGUCGAG- -5'
30885 5' -56.1 NC_006552.1 + 26280 0.67 0.62196
Target:  5'- aUGACCGUgGCCGCgcccAGCGgguagUCGCcggccaacagcAGCUCg -3'
miRNA:   3'- -AUUGGUAgCGGUG----UCGC-----AGCG-----------UCGAG- -5'
30885 5' -56.1 NC_006552.1 + 13367 0.67 0.62196
Target:  5'- cGACCAguucaCGCaCGCGGCGUUucgacuccgGCAcGCUCa -3'
miRNA:   3'- aUUGGUa----GCG-GUGUCGCAG---------CGU-CGAG- -5'
30885 5' -56.1 NC_006552.1 + 13409 0.67 0.610948
Target:  5'- -uGCCG-CGCUcacggaACAGCGUCGCuAGgUCg -3'
miRNA:   3'- auUGGUaGCGG------UGUCGCAGCG-UCgAG- -5'
30885 5' -56.1 NC_006552.1 + 40442 0.67 0.599956
Target:  5'- -uGCCGUUGCgcuugCGCAGCGUCGCcauguccuuGGCg- -3'
miRNA:   3'- auUGGUAGCG-----GUGUCGCAGCG---------UCGag -5'
30885 5' -56.1 NC_006552.1 + 12013 0.67 0.58899
Target:  5'- -cACCGgcUCGCCGCGGUGUUuCuccuGCUCg -3'
miRNA:   3'- auUGGU--AGCGGUGUCGCAGcGu---CGAG- -5'
30885 5' -56.1 NC_006552.1 + 4822 0.67 0.578061
Target:  5'- gAugCGcacgCGCaCAgGGCGgucgCGCAGCUCa -3'
miRNA:   3'- aUugGUa---GCG-GUgUCGCa---GCGUCGAG- -5'
30885 5' -56.1 NC_006552.1 + 32295 0.68 0.567177
Target:  5'- cGACCAccUCGaugcggcaCACGGCGUCgGCcuGGCUCu -3'
miRNA:   3'- aUUGGU--AGCg-------GUGUCGCAG-CG--UCGAG- -5'
30885 5' -56.1 NC_006552.1 + 8426 0.68 0.567177
Target:  5'- aGGCCG-CGCCA-GGCG-CGCAGCa- -3'
miRNA:   3'- aUUGGUaGCGGUgUCGCaGCGUCGag -5'
30885 5' -56.1 NC_006552.1 + 50503 0.68 0.556346
Target:  5'- cAACCA--GCCACGGCGcCGgCAGCcgUCa -3'
miRNA:   3'- aUUGGUagCGGUGUCGCaGC-GUCG--AG- -5'
30885 5' -56.1 NC_006552.1 + 35906 0.68 0.513698
Target:  5'- --cUCAUC-CCGCAgGCGUUGUAGCUUg -3'
miRNA:   3'- auuGGUAGcGGUGU-CGCAGCGUCGAG- -5'
30885 5' -56.1 NC_006552.1 + 57307 0.69 0.503239
Target:  5'- cAACgAUgcCGCgCGCAGUGgccuggCGCAGCUCg -3'
miRNA:   3'- aUUGgUA--GCG-GUGUCGCa-----GCGUCGAG- -5'
30885 5' -56.1 NC_006552.1 + 7541 0.69 0.482609
Target:  5'- cAGCCGUa-CCGCGGCGUCcuuCAGUUCg -3'
miRNA:   3'- aUUGGUAgcGGUGUCGCAGc--GUCGAG- -5'
30885 5' -56.1 NC_006552.1 + 50186 0.69 0.472448
Target:  5'- cGGCUAUCuGCCGCAGCaUCGCAacGCg- -3'
miRNA:   3'- aUUGGUAG-CGGUGUCGcAGCGU--CGag -5'
30885 5' -56.1 NC_006552.1 + 34487 0.71 0.366088
Target:  5'- cAGCCucGUCGCCcucgaacuucacggGCGGCGgcgGCAGCUCg -3'
miRNA:   3'- aUUGG--UAGCGG--------------UGUCGCag-CGUCGAG- -5'
30885 5' -56.1 NC_006552.1 + 22607 0.72 0.342405
Target:  5'- cGGgCGUCGCCgauggcgacaugcACGGCGUCGCGGUa- -3'
miRNA:   3'- aUUgGUAGCGG-------------UGUCGCAGCGUCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.