miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30886 3' -53 NC_006552.1 + 2125 0.66 0.852358
Target:  5'- -cGAGCagauccCUGAUG-ACUUCAGGCcguGGCg -3'
miRNA:   3'- ucCUCG------GACUGCuUGAAGUUCGu--CCG- -5'
30886 3' -53 NC_006552.1 + 59614 0.67 0.816345
Target:  5'- cAGGccGCCUGGCaGAAC-UCGGGCcgggAGGUg -3'
miRNA:   3'- -UCCu-CGGACUG-CUUGaAGUUCG----UCCG- -5'
30886 3' -53 NC_006552.1 + 41051 0.68 0.766961
Target:  5'- aGGGaAGCgCUcGCGGAUUuccUCGGGCAGGUu -3'
miRNA:   3'- -UCC-UCG-GAcUGCUUGA---AGUUCGUCCG- -5'
30886 3' -53 NC_006552.1 + 27368 0.68 0.731263
Target:  5'- cAGGAGCCggcagaccagcagGcCGAACUguuuGCGGGCc -3'
miRNA:   3'- -UCCUCGGa------------CuGCUUGAaguuCGUCCG- -5'
30886 3' -53 NC_006552.1 + 49661 0.69 0.703146
Target:  5'- cGGAGCCcgagGACGAA----GAGCAGGa -3'
miRNA:   3'- uCCUCGGa---CUGCUUgaagUUCGUCCg -5'
30886 3' -53 NC_006552.1 + 41737 0.69 0.692194
Target:  5'- uGGucuGCUUGACGccAGCgaacaaCGAGCGGGCg -3'
miRNA:   3'- uCCu--CGGACUGC--UUGaa----GUUCGUCCG- -5'
30886 3' -53 NC_006552.1 + 6322 0.69 0.681181
Target:  5'- uGGaAGCC-GAUGGACUUCAuAGC-GGCc -3'
miRNA:   3'- uCC-UCGGaCUGCUUGAAGU-UCGuCCG- -5'
30886 3' -53 NC_006552.1 + 30928 0.7 0.659024
Target:  5'- uGGAGCCUGcugugaACGAACaUCuggaacggAGGCAaGGCg -3'
miRNA:   3'- uCCUCGGAC------UGCUUGaAG--------UUCGU-CCG- -5'
30886 3' -53 NC_006552.1 + 32714 0.7 0.636764
Target:  5'- cGGGGCCgGugGAGCgcUCGAaCAGGUc -3'
miRNA:   3'- uCCUCGGaCugCUUGa-AGUUcGUCCG- -5'
30886 3' -53 NC_006552.1 + 59883 0.72 0.537488
Target:  5'- gAGG-GCCUGACGAAgccgaUCAuGUGGGCa -3'
miRNA:   3'- -UCCuCGGACUGCUUga---AGUuCGUCCG- -5'
30886 3' -53 NC_006552.1 + 11050 0.74 0.414983
Target:  5'- cAGGcGGCCgc-CGGGCUUC-AGCAGGCu -3'
miRNA:   3'- -UCC-UCGGacuGCUUGAAGuUCGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.