miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30887 3' -54 NC_006552.1 + 38197 0.66 0.825088
Target:  5'- cUCgAGGGCga-CCuuGAUCcgaguGCGCAGCa -3'
miRNA:   3'- -AGaUCUUGaagGGggCUAG-----CGCGUCG- -5'
30887 3' -54 NC_006552.1 + 24615 0.66 0.815912
Target:  5'- --aAGGugUagaUgCCCUGcUCGCGCGGCu -3'
miRNA:   3'- agaUCUugA---AgGGGGCuAGCGCGUCG- -5'
30887 3' -54 NC_006552.1 + 57807 0.66 0.806545
Target:  5'- -gUGGGGC--CCCCUGAUCGCGaaaAGg -3'
miRNA:   3'- agAUCUUGaaGGGGGCUAGCGCg--UCg -5'
30887 3' -54 NC_006552.1 + 44501 0.67 0.787278
Target:  5'- -----cGCUU-CCUCGAUCGCaGCAGCu -3'
miRNA:   3'- agaucuUGAAgGGGGCUAGCG-CGUCG- -5'
30887 3' -54 NC_006552.1 + 23103 0.67 0.783345
Target:  5'- cUCgugGGAACUgcgUCCCCCGGUaugguccugguagGCGUAGa -3'
miRNA:   3'- -AGa--UCUUGA---AGGGGGCUAg------------CGCGUCg -5'
30887 3' -54 NC_006552.1 + 40256 0.67 0.777399
Target:  5'- ---cGAACaggUagCCCCGAUCGCGCAu- -3'
miRNA:   3'- agauCUUG---AagGGGGCUAGCGCGUcg -5'
30887 3' -54 NC_006552.1 + 51999 0.68 0.704709
Target:  5'- --gAGAGCUUgCCgCGG-CGCGcCAGCa -3'
miRNA:   3'- agaUCUUGAAgGGgGCUaGCGC-GUCG- -5'
30887 3' -54 NC_006552.1 + 53273 0.68 0.692875
Target:  5'- cUCUGGAggGCUUUCUUgCGAUCaacggccGCGCAGCc -3'
miRNA:   3'- -AGAUCU--UGAAGGGG-GCUAG-------CGCGUCG- -5'
30887 3' -54 NC_006552.1 + 33443 0.69 0.672278
Target:  5'- cCUGGAGCUUgCCCgCCuc-CGCGaCGGCa -3'
miRNA:   3'- aGAUCUUGAA-GGG-GGcuaGCGC-GUCG- -5'
30887 3' -54 NC_006552.1 + 7197 0.69 0.672278
Target:  5'- --aAGcGCgucccgUCCCCGG-CGCGCAGCg -3'
miRNA:   3'- agaUCuUGaa----GGGGGCUaGCGCGUCG- -5'
30887 3' -54 NC_006552.1 + 47598 0.72 0.510234
Target:  5'- --gGGGACgccUCgCCCCGggUGUGCAGCu -3'
miRNA:   3'- agaUCUUGa--AG-GGGGCuaGCGCGUCG- -5'
30887 3' -54 NC_006552.1 + 8314 0.72 0.510234
Target:  5'- aUCguuGAGCUUCCauauGUCGCGCAGCu -3'
miRNA:   3'- -AGau-CUUGAAGGgggcUAGCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.