miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30888 5' -57.3 NC_006552.1 + 61198 0.66 0.69144
Target:  5'- gCGCCGAUAUcGGCUGCuggGGCGACaCagccaaGGg -3'
miRNA:   3'- -GUGGCUGUAcCCGAUG---CCGUUG-Gg-----CC- -5'
30888 5' -57.3 NC_006552.1 + 62590 0.66 0.67774
Target:  5'- gGCuCGACAaGGGCgccgagcGCGGCAcguggguugagucuGCCCGc -3'
miRNA:   3'- gUG-GCUGUaCCCGa------UGCCGU--------------UGGGCc -5'
30888 5' -57.3 NC_006552.1 + 20823 0.66 0.670334
Target:  5'- cCGgCGGCGUGGcGUcgaacguaGGCAACUCGGg -3'
miRNA:   3'- -GUgGCUGUACC-CGaug-----CCGUUGGGCC- -5'
30888 5' -57.3 NC_006552.1 + 26217 0.66 0.670334
Target:  5'- -gUCGGCAUGGGCgacagGUGGCGaaacuGCgCCGGu -3'
miRNA:   3'- guGGCUGUACCCGa----UGCCGU-----UG-GGCC- -5'
30888 5' -57.3 NC_006552.1 + 32031 0.66 0.670334
Target:  5'- gCGCCauguCAgccagGGGCgUGCGGUAGCCCu- -3'
miRNA:   3'- -GUGGcu--GUa----CCCG-AUGCCGUUGGGcc -5'
30888 5' -57.3 NC_006552.1 + 64215 0.66 0.658663
Target:  5'- gCAgCGGCAucUGGGaaacaggUUGCGGCcaGACCUGGa -3'
miRNA:   3'- -GUgGCUGU--ACCC-------GAUGCCG--UUGGGCC- -5'
30888 5' -57.3 NC_006552.1 + 24268 0.66 0.657601
Target:  5'- uCGCCGGCAcuaccGGCaGCGGCAuagcguagacgcCCCGGc -3'
miRNA:   3'- -GUGGCUGUac---CCGaUGCCGUu-----------GGGCC- -5'
30888 5' -57.3 NC_006552.1 + 20934 0.66 0.649093
Target:  5'- cCACCGugGUgucgauguccGGGCgucCGGC-ACCgGGa -3'
miRNA:   3'- -GUGGCugUA----------CCCGau-GCCGuUGGgCC- -5'
30888 5' -57.3 NC_006552.1 + 3636 0.66 0.6459
Target:  5'- -uCCgGGCAggGGGCUccucaccgccgacgACGGUGACCCGa -3'
miRNA:   3'- guGG-CUGUa-CCCGA--------------UGCCGUUGGGCc -5'
30888 5' -57.3 NC_006552.1 + 57479 0.67 0.627793
Target:  5'- gCGCCGGUAcGGGCUugGaaaugggccuggGCcGCCCGGu -3'
miRNA:   3'- -GUGGCUGUaCCCGAugC------------CGuUGGGCC- -5'
30888 5' -57.3 NC_006552.1 + 35933 0.67 0.617145
Target:  5'- uGCgCGGCcUGGGCUugGGCcuUCCa- -3'
miRNA:   3'- gUG-GCUGuACCCGAugCCGuuGGGcc -5'
30888 5' -57.3 NC_006552.1 + 33704 0.67 0.606508
Target:  5'- aGCCGGC--GGGCaACGGgAACUCGa -3'
miRNA:   3'- gUGGCUGuaCCCGaUGCCgUUGGGCc -5'
30888 5' -57.3 NC_006552.1 + 20900 0.67 0.585305
Target:  5'- -uCCGGCAUGGcgauCUGCGGCGcAUCgGGa -3'
miRNA:   3'- guGGCUGUACCc---GAUGCCGU-UGGgCC- -5'
30888 5' -57.3 NC_006552.1 + 31042 0.68 0.574755
Target:  5'- aCACCGAUAcccUGcGCUgGCGGCuuGCCCGa -3'
miRNA:   3'- -GUGGCUGU---ACcCGA-UGCCGu-UGGGCc -5'
30888 5' -57.3 NC_006552.1 + 2627 0.68 0.564249
Target:  5'- aGCCGAUucgaugGGGCU--GGCGGCCCu- -3'
miRNA:   3'- gUGGCUGua----CCCGAugCCGUUGGGcc -5'
30888 5' -57.3 NC_006552.1 + 42942 0.68 0.564249
Target:  5'- aACCGcCAccagccuuuuUGGGCUuCGGCGACaCCGc -3'
miRNA:   3'- gUGGCuGU----------ACCCGAuGCCGUUG-GGCc -5'
30888 5' -57.3 NC_006552.1 + 45382 0.68 0.561107
Target:  5'- aGCgCGGCccGGGCUcuugcuCGGCGccgacgaauuccccGCCCGGg -3'
miRNA:   3'- gUG-GCUGuaCCCGAu-----GCCGU--------------UGGGCC- -5'
30888 5' -57.3 NC_006552.1 + 64777 0.69 0.510594
Target:  5'- cCACCGACGcccUGGGCauccugccggaaACGGCGuuUCCGGc -3'
miRNA:   3'- -GUGGCUGU---ACCCGa-----------UGCCGUu-GGGCC- -5'
30888 5' -57.3 NC_006552.1 + 31260 0.69 0.482586
Target:  5'- cCGCCGuuggGGGUgauCGGCAGgCCGGu -3'
miRNA:   3'- -GUGGCuguaCCCGau-GCCGUUgGGCC- -5'
30888 5' -57.3 NC_006552.1 + 1986 0.69 0.472763
Target:  5'- gAgCGACAgcgcUGGGCUGCauCAGCCUGGa -3'
miRNA:   3'- gUgGCUGU----ACCCGAUGccGUUGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.