Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30888 | 5' | -57.3 | NC_006552.1 | + | 1986 | 0.69 | 0.472763 |
Target: 5'- gAgCGACAgcgcUGGGCUGCauCAGCCUGGa -3' miRNA: 3'- gUgGCUGU----ACCCGAUGccGUUGGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 2627 | 0.68 | 0.564249 |
Target: 5'- aGCCGAUucgaugGGGCU--GGCGGCCCu- -3' miRNA: 3'- gUGGCUGua----CCCGAugCCGUUGGGcc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 3636 | 0.66 | 0.6459 |
Target: 5'- -uCCgGGCAggGGGCUccucaccgccgacgACGGUGACCCGa -3' miRNA: 3'- guGG-CUGUa-CCCGA--------------UGCCGUUGGGCc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 13629 | 0.72 | 0.355514 |
Target: 5'- -gUCGGCAcGGGCcugcuCGGCGGCCUGGc -3' miRNA: 3'- guGGCUGUaCCCGau---GCCGUUGGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 20823 | 0.66 | 0.670334 |
Target: 5'- cCGgCGGCGUGGcGUcgaacguaGGCAACUCGGg -3' miRNA: 3'- -GUgGCUGUACC-CGaug-----CCGUUGGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 20900 | 0.67 | 0.585305 |
Target: 5'- -uCCGGCAUGGcgauCUGCGGCGcAUCgGGa -3' miRNA: 3'- guGGCUGUACCc---GAUGCCGU-UGGgCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 20934 | 0.66 | 0.649093 |
Target: 5'- cCACCGugGUgucgauguccGGGCgucCGGC-ACCgGGa -3' miRNA: 3'- -GUGGCugUA----------CCCGau-GCCGuUGGgCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 24268 | 0.66 | 0.657601 |
Target: 5'- uCGCCGGCAcuaccGGCaGCGGCAuagcguagacgcCCCGGc -3' miRNA: 3'- -GUGGCUGUac---CCGaUGCCGUu-----------GGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 26217 | 0.66 | 0.670334 |
Target: 5'- -gUCGGCAUGGGCgacagGUGGCGaaacuGCgCCGGu -3' miRNA: 3'- guGGCUGUACCCGa----UGCCGU-----UG-GGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 28741 | 0.7 | 0.425252 |
Target: 5'- aGCCGGCcgGcGGCgaaGGCAugCCGa -3' miRNA: 3'- gUGGCUGuaC-CCGaugCCGUugGGCc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 31042 | 0.68 | 0.574755 |
Target: 5'- aCACCGAUAcccUGcGCUgGCGGCuuGCCCGa -3' miRNA: 3'- -GUGGCUGU---ACcCGA-UGCCGu-UGGGCc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 31260 | 0.69 | 0.482586 |
Target: 5'- cCGCCGuuggGGGUgauCGGCAGgCCGGu -3' miRNA: 3'- -GUGGCuguaCCCGau-GCCGUUgGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 32031 | 0.66 | 0.670334 |
Target: 5'- gCGCCauguCAgccagGGGCgUGCGGUAGCCCu- -3' miRNA: 3'- -GUGGcu--GUa----CCCG-AUGCCGUUGGGcc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 33704 | 0.67 | 0.606508 |
Target: 5'- aGCCGGC--GGGCaACGGgAACUCGa -3' miRNA: 3'- gUGGCUGuaCCCGaUGCCgUUGGGCc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 35393 | 0.7 | 0.425252 |
Target: 5'- gGCCGGCGguucggucuuGGCUuuguugAUGGCAGCCUGGg -3' miRNA: 3'- gUGGCUGUac--------CCGA------UGCCGUUGGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 35933 | 0.67 | 0.617145 |
Target: 5'- uGCgCGGCcUGGGCUugGGCcuUCCa- -3' miRNA: 3'- gUG-GCUGuACCCGAugCCGuuGGGcc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 39860 | 0.7 | 0.443921 |
Target: 5'- aGCCGcCAgucggUGGGCU-CGGCuuCCUGGu -3' miRNA: 3'- gUGGCuGU-----ACCCGAuGCCGuuGGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 42942 | 0.68 | 0.564249 |
Target: 5'- aACCGcCAccagccuuuuUGGGCUuCGGCGACaCCGc -3' miRNA: 3'- gUGGCuGU----------ACCCGAuGCCGUUG-GGCc -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 45382 | 0.68 | 0.561107 |
Target: 5'- aGCgCGGCccGGGCUcuugcuCGGCGccgacgaauuccccGCCCGGg -3' miRNA: 3'- gUG-GCUGuaCCCGAu-----GCCGU--------------UGGGCC- -5' |
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30888 | 5' | -57.3 | NC_006552.1 | + | 49263 | 0.76 | 0.182093 |
Target: 5'- gUACUGGCAcGGGCUGCGGCGcuuACgUGGg -3' miRNA: 3'- -GUGGCUGUaCCCGAUGCCGU---UGgGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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