miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30889 3' -53.6 NC_006552.1 + 56521 0.66 0.866495
Target:  5'- uGCCUccucaacgACCGauuCUCCGcuaCCACGGCGg -3'
miRNA:   3'- gUGGA--------UGGCguuGAGGCa--GGUGUUGC- -5'
30889 3' -53.6 NC_006552.1 + 58555 0.66 0.858367
Target:  5'- uGCCcACUGUGACUgCGgcaaaCCGCGGCGa -3'
miRNA:   3'- gUGGaUGGCGUUGAgGCa----GGUGUUGC- -5'
30889 3' -53.6 NC_006552.1 + 54012 0.66 0.841417
Target:  5'- gGCCcugGCCGCGAg-CCG-CCACcGCGg -3'
miRNA:   3'- gUGGa--UGGCGUUgaGGCaGGUGuUGC- -5'
30889 3' -53.6 NC_006552.1 + 30555 0.66 0.841417
Target:  5'- aACCUAUCgGCcccgCCgGUCCACAGCGc -3'
miRNA:   3'- gUGGAUGG-CGuugaGG-CAGGUGUUGC- -5'
30889 3' -53.6 NC_006552.1 + 54521 0.66 0.841417
Target:  5'- uCACCcGCCGCAAgcgcacCUUCG-CCGCAAUc -3'
miRNA:   3'- -GUGGaUGGCGUU------GAGGCaGGUGUUGc -5'
30889 3' -53.6 NC_006552.1 + 709 0.66 0.840546
Target:  5'- gAUCUGgCGUAaccaACUCCGcgccuucUCCGCGACGu -3'
miRNA:   3'- gUGGAUgGCGU----UGAGGC-------AGGUGUUGC- -5'
30889 3' -53.6 NC_006552.1 + 54111 0.66 0.832611
Target:  5'- -cCCUACCGCAgGCUCUGgcgcaucgUCugAGCGc -3'
miRNA:   3'- guGGAUGGCGU-UGAGGCa-------GGugUUGC- -5'
30889 3' -53.6 NC_006552.1 + 22129 0.66 0.823595
Target:  5'- gGCC-ACCGUGGCaCCGUCCACc--- -3'
miRNA:   3'- gUGGaUGGCGUUGaGGCAGGUGuugc -5'
30889 3' -53.6 NC_006552.1 + 345 0.66 0.823595
Target:  5'- uCGCUUGCCGCGACagCGg-CACGAUa -3'
miRNA:   3'- -GUGGAUGGCGUUGagGCagGUGUUGc -5'
30889 3' -53.6 NC_006552.1 + 33440 0.66 0.823595
Target:  5'- uCACCUGgaGCuuGC-CCGccUCCGCGACGg -3'
miRNA:   3'- -GUGGAUggCGu-UGaGGC--AGGUGUUGC- -5'
30889 3' -53.6 NC_006552.1 + 7358 0.66 0.823595
Target:  5'- uGCCcGCCcCAGUUCCG-CCGCAGCGc -3'
miRNA:   3'- gUGGaUGGcGUUGAGGCaGGUGUUGC- -5'
30889 3' -53.6 NC_006552.1 + 32342 0.66 0.822683
Target:  5'- aGCCUGCCGCGcacggcgGCUUCG-CgCACuGCGu -3'
miRNA:   3'- gUGGAUGGCGU-------UGAGGCaG-GUGuUGC- -5'
30889 3' -53.6 NC_006552.1 + 27518 0.67 0.81438
Target:  5'- aCGCCUGcagaccCCGCGGCUCCaGguaGCGACGc -3'
miRNA:   3'- -GUGGAU------GGCGUUGAGG-CaggUGUUGC- -5'
30889 3' -53.6 NC_006552.1 + 60607 0.67 0.81438
Target:  5'- aCACCUACCGCcgaaaccaGGCcaUCGUCCAuuuCAGCa -3'
miRNA:   3'- -GUGGAUGGCG--------UUGa-GGCAGGU---GUUGc -5'
30889 3' -53.6 NC_006552.1 + 7573 0.67 0.81438
Target:  5'- gCGCCUGCgGgAug-CCGUUCACAGCc -3'
miRNA:   3'- -GUGGAUGgCgUugaGGCAGGUGUUGc -5'
30889 3' -53.6 NC_006552.1 + 55330 0.69 0.713561
Target:  5'- gUACCUggaaggcgACCGCGACUUCGUgggguucagCCGCGagGCGg -3'
miRNA:   3'- -GUGGA--------UGGCGUUGAGGCA---------GGUGU--UGC- -5'
30889 3' -53.6 NC_006552.1 + 18964 0.69 0.680165
Target:  5'- gACCUGCUGCGGCcgcuUCCGucgcucuUCCACuACGc -3'
miRNA:   3'- gUGGAUGGCGUUG----AGGC-------AGGUGuUGC- -5'
30889 3' -53.6 NC_006552.1 + 54050 0.69 0.670374
Target:  5'- cCACCaGCCGCAACcggcgaCCGaCUACGACa -3'
miRNA:   3'- -GUGGaUGGCGUUGa-----GGCaGGUGUUGc -5'
30889 3' -53.6 NC_006552.1 + 15996 0.71 0.547338
Target:  5'- gGCCUGCUGCAccaACUggucaguugcgccaCUGUCCACGGCc -3'
miRNA:   3'- gUGGAUGGCGU---UGA--------------GGCAGGUGUUGc -5'
30889 3' -53.6 NC_006552.1 + 57326 0.72 0.518745
Target:  5'- gGCCUGgCGCAGCUCgacaucuUCCACGACa -3'
miRNA:   3'- gUGGAUgGCGUUGAGgc-----AGGUGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.