miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30889 5' -56.9 NC_006552.1 + 32696 0.66 0.70114
Target:  5'- uGUCGUcgcCGGcCGGCGcGGgGCCGGu -3'
miRNA:   3'- -CAGUAauaGCC-GCCGCuCCgCGGUCc -5'
30889 5' -56.9 NC_006552.1 + 62183 0.66 0.690569
Target:  5'- -------cCGGUa-CGGGGCGCCAGGg -3'
miRNA:   3'- caguaauaGCCGccGCUCCGCGGUCC- -5'
30889 5' -56.9 NC_006552.1 + 34813 0.66 0.658577
Target:  5'- uUCGccuUCGGaCGGcCGAGGCgGCgCAGGu -3'
miRNA:   3'- cAGUaauAGCC-GCC-GCUCCG-CG-GUCC- -5'
30889 5' -56.9 NC_006552.1 + 39705 0.66 0.658577
Target:  5'- uUCcUUGUCGGCGaCGGcuCGCCAGGc -3'
miRNA:   3'- cAGuAAUAGCCGCcGCUccGCGGUCC- -5'
30889 5' -56.9 NC_006552.1 + 20816 0.66 0.647852
Target:  5'- cUCGcgucCGGCGGCGuGGCGUCGa- -3'
miRNA:   3'- cAGUaauaGCCGCCGCuCCGCGGUcc -5'
30889 5' -56.9 NC_006552.1 + 37795 0.67 0.64141
Target:  5'- cGUCGgcgAUCGGCGcgaucauuggcaucuGCGcgaucuGGGCGCCGGc -3'
miRNA:   3'- -CAGUaa-UAGCCGC---------------CGC------UCCGCGGUCc -5'
30889 5' -56.9 NC_006552.1 + 26502 0.67 0.63604
Target:  5'- cUCAacgAUcCGGCGccugccaccagcaGCGGcGGCGCCGGGg -3'
miRNA:   3'- cAGUaa-UA-GCCGC-------------CGCU-CCGCGGUCC- -5'
30889 5' -56.9 NC_006552.1 + 58610 0.68 0.583539
Target:  5'- gGUgGgcGUCGGUGGCc--GCGCCGGGc -3'
miRNA:   3'- -CAgUaaUAGCCGCCGcucCGCGGUCC- -5'
30889 5' -56.9 NC_006552.1 + 36147 0.68 0.541316
Target:  5'- uGUCugccugAUCGGCGGCaucGGCGCUGGc -3'
miRNA:   3'- -CAGuaa---UAGCCGCCGcu-CCGCGGUCc -5'
30889 5' -56.9 NC_006552.1 + 29935 0.68 0.541316
Target:  5'- -gCAUUGUCaGCGGCGAGuucucauCGuCCAGGc -3'
miRNA:   3'- caGUAAUAGcCGCCGCUCc------GC-GGUCC- -5'
30889 5' -56.9 NC_006552.1 + 28605 0.69 0.504218
Target:  5'- uUCAggAUCGGCGGCGGuucgaugccuuccaGCGgCAGGu -3'
miRNA:   3'- cAGUaaUAGCCGCCGCUc-------------CGCgGUCC- -5'
30889 5' -56.9 NC_006552.1 + 14997 0.78 0.152791
Target:  5'- --uGUUGUCGGUGGCGGuaggcuucGGCGCCAGu -3'
miRNA:   3'- cagUAAUAGCCGCCGCU--------CCGCGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.