miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30890 5' -61.7 NC_006552.1 + 52945 0.67 0.384844
Target:  5'- uGCgccgGCGcCCGCCGCcGGuGcGGCAU-CCg -3'
miRNA:   3'- cUGa---CGC-GGCGGCGaCC-C-CCGUAuGG- -5'
30890 5' -61.7 NC_006552.1 + 21515 0.67 0.383993
Target:  5'- cGCUGCGCUGCCGCUuugcGuGGuggucacguccauGGCcaccGUGCCa -3'
miRNA:   3'- cUGACGCGGCGGCGA----C-CC-------------CCG----UAUGG- -5'
30890 5' -61.7 NC_006552.1 + 38450 0.67 0.367232
Target:  5'- uGCUGCuGUuccuggaUGCCGCUGGuGGcCGUGCCu -3'
miRNA:   3'- cUGACG-CG-------GCGGCGACCcCC-GUAUGG- -5'
30890 5' -61.7 NC_006552.1 + 10750 0.68 0.336023
Target:  5'- uGGCgaUGCGCUGCUGCgcGGugcucaGGGCAUGCa -3'
miRNA:   3'- -CUG--ACGCGGCGGCGa-CC------CCCGUAUGg -5'
30890 5' -61.7 NC_006552.1 + 61195 0.68 0.305349
Target:  5'- -cCUGCGCCgauaucgGCUGCUGGGGcGaCAcaGCCa -3'
miRNA:   3'- cuGACGCGG-------CGGCGACCCC-C-GUa-UGG- -5'
30890 5' -61.7 NC_006552.1 + 15572 0.69 0.29188
Target:  5'- uGCUGCGCCGCC--UGGuccaGGGCGaaGCCg -3'
miRNA:   3'- cUGACGCGGCGGcgACC----CCCGUa-UGG- -5'
30890 5' -61.7 NC_006552.1 + 51908 0.7 0.234368
Target:  5'- --aUGCGCCGCCGCaUGGaGGaGCAagACg -3'
miRNA:   3'- cugACGCGGCGGCG-ACC-CC-CGUa-UGg -5'
30890 5' -61.7 NC_006552.1 + 31647 0.7 0.222955
Target:  5'- -cCUGCG-CGCUGCUGcGGGGUuuugaauaacgGUGCCu -3'
miRNA:   3'- cuGACGCgGCGGCGAC-CCCCG-----------UAUGG- -5'
30890 5' -61.7 NC_006552.1 + 26441 0.72 0.177317
Target:  5'- cGACgGCGCCGaCUcCUGGGGGCcgcgcaGCCa -3'
miRNA:   3'- -CUGaCGCGGC-GGcGACCCCCGua----UGG- -5'
30890 5' -61.7 NC_006552.1 + 31249 0.76 0.093793
Target:  5'- cGAUgaUGuCGCCGCCGUUGGGGGUgaucggcagGCCg -3'
miRNA:   3'- -CUG--AC-GCGGCGGCGACCCCCGua-------UGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.