miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
30890	5'	-61.7	NC_006552.1	+	52945	0.67	0.384844
	Target:  5'- uGCgccgGCGcCCGCCGCcGGuGcGGCAU-CCg -3' miRNA:   3'- cUGa---CGC-GGCGGCGaCC-C-CCGUAuGG- -5'
30890	5'	-61.7	NC_006552.1	+	21515	0.67	0.383993
	Target:  5'- cGCUGCGCUGCCGCUuugcGuGGuggucacguccauGGCcaccGUGCCa -3' miRNA:   3'- cUGACGCGGCGGCGA----C-CC-------------CCG----UAUGG- -5'
30890	5'	-61.7	NC_006552.1	+	38450	0.67	0.367232
	Target:  5'- uGCUGCuGUuccuggaUGCCGCUGGuGGcCGUGCCu -3' miRNA:   3'- cUGACG-CG-------GCGGCGACCcCC-GUAUGG- -5'
30890	5'	-61.7	NC_006552.1	+	10750	0.68	0.336023
	Target:  5'- uGGCgaUGCGCUGCUGCgcGGugcucaGGGCAUGCa -3' miRNA:   3'- -CUG--ACGCGGCGGCGa-CC------CCCGUAUGg -5'
30890	5'	-61.7	NC_006552.1	+	61195	0.68	0.305349
	Target:  5'- -cCUGCGCCgauaucgGCUGCUGGGGcGaCAcaGCCa -3' miRNA:   3'- cuGACGCGG-------CGGCGACCCC-C-GUa-UGG- -5'
30890	5'	-61.7	NC_006552.1	+	15572	0.69	0.29188
	Target:  5'- uGCUGCGCCGCC--UGGuccaGGGCGaaGCCg -3' miRNA:   3'- cUGACGCGGCGGcgACC----CCCGUa-UGG- -5'
30890	5'	-61.7	NC_006552.1	+	51908	0.7	0.234368
	Target:  5'- --aUGCGCCGCCGCaUGGaGGaGCAagACg -3' miRNA:   3'- cugACGCGGCGGCG-ACC-CC-CGUa-UGg -5'
30890	5'	-61.7	NC_006552.1	+	31647	0.7	0.222955
	Target:  5'- -cCUGCG-CGCUGCUGcGGGGUuuugaauaacgGUGCCu -3' miRNA:   3'- cuGACGCgGCGGCGAC-CCCCG-----------UAUGG- -5'
30890	5'	-61.7	NC_006552.1	+	26441	0.72	0.177317
	Target:  5'- cGACgGCGCCGaCUcCUGGGGGCcgcgcaGCCa -3' miRNA:   3'- -CUGaCGCGGC-GGcGACCCCCGua----UGG- -5'
30890	5'	-61.7	NC_006552.1	+	31249	0.76	0.093793
	Target:  5'- cGAUgaUGuCGCCGCCGUUGGGGGUgaucggcagGCCg -3' miRNA:   3'- -CUG--AC-GCGGCGGCGACCCCCGua-------UGG- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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