miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30891 5' -58.8 NC_006552.1 + 54306 0.66 0.570001
Target:  5'- -gGUCGGCaag-GGUGAcGCACCGCu -3'
miRNA:   3'- aaCAGCCGgcagUCGCUuCGUGGCGc -5'
30891 5' -58.8 NC_006552.1 + 55313 0.66 0.548971
Target:  5'- -aG-CGGCUGgcUCGGCGAguaccuggaaGGCgACCGCGa -3'
miRNA:   3'- aaCaGCCGGC--AGUCGCU----------UCG-UGGCGC- -5'
30891 5' -58.8 NC_006552.1 + 12202 0.66 0.538545
Target:  5'- cUUGUCGGaCCGcgcagaggccUCAGCGcGGGCGgccauCCGCGc -3'
miRNA:   3'- -AACAGCC-GGC----------AGUCGC-UUCGU-----GGCGC- -5'
30891 5' -58.8 NC_006552.1 + 4350 0.66 0.528188
Target:  5'- gUUGaCGGCCGUCAGCaGAGauuuGCCGa- -3'
miRNA:   3'- -AACaGCCGGCAGUCGcUUCg---UGGCgc -5'
30891 5' -58.8 NC_006552.1 + 43981 0.67 0.507705
Target:  5'- cUUGUCGaugccGCUGUCGGCGAccAGgGCCagGCGa -3'
miRNA:   3'- -AACAGC-----CGGCAGUCGCU--UCgUGG--CGC- -5'
30891 5' -58.8 NC_006552.1 + 32020 0.67 0.507705
Target:  5'- cUUGUCGGCCagcgccauGUCAGCcAGGgGCgUGCGg -3'
miRNA:   3'- -AACAGCCGG--------CAGUCGcUUCgUG-GCGC- -5'
30891 5' -58.8 NC_006552.1 + 19728 0.68 0.448477
Target:  5'- -cGUCGGCCacGUUGGCGcuGGCcGCUGCGc -3'
miRNA:   3'- aaCAGCCGG--CAGUCGCu-UCG-UGGCGC- -5'
30891 5' -58.8 NC_006552.1 + 63484 0.68 0.429593
Target:  5'- cUGcCGGCCGcCGGCGccggagcaaccgGAGaCACCGCc -3'
miRNA:   3'- aACaGCCGGCaGUCGC------------UUC-GUGGCGc -5'
30891 5' -58.8 NC_006552.1 + 25209 0.68 0.429593
Target:  5'- cUGUUGGUCaG-CAGCGcGGCGCCGUu -3'
miRNA:   3'- aACAGCCGG-CaGUCGCuUCGUGGCGc -5'
30891 5' -58.8 NC_006552.1 + 11782 0.68 0.429593
Target:  5'- -cG-CGGCUcuugaaGUCGGCGAacuGGuCACCGCGg -3'
miRNA:   3'- aaCaGCCGG------CAGUCGCU---UC-GUGGCGC- -5'
30891 5' -58.8 NC_006552.1 + 25023 0.68 0.420328
Target:  5'- -cGgCGGCauCGUCGGCGGAGaguuCCGCGu -3'
miRNA:   3'- aaCaGCCG--GCAGUCGCUUCgu--GGCGC- -5'
30891 5' -58.8 NC_006552.1 + 21395 0.69 0.402166
Target:  5'- gUGcCGGCCgGUCAgGCGAAGCGugaaCGUGa -3'
miRNA:   3'- aACaGCCGG-CAGU-CGCUUCGUg---GCGC- -5'
30891 5' -58.8 NC_006552.1 + 9573 0.69 0.359008
Target:  5'- ---aCGGCUGUCGGCGAacugauGGCccugGCUGCGg -3'
miRNA:   3'- aacaGCCGGCAGUCGCU------UCG----UGGCGC- -5'
30891 5' -58.8 NC_006552.1 + 33620 0.69 0.355698
Target:  5'- -cGUCGGCguaggcaaagcccaCGUCAGCGGucacgccGGCACCGa- -3'
miRNA:   3'- aaCAGCCG--------------GCAGUCGCU-------UCGUGGCgc -5'
30891 5' -58.8 NC_006552.1 + 32824 0.71 0.296941
Target:  5'- ----aGGCgGUCGGUGAAGCuuucCCGCGg -3'
miRNA:   3'- aacagCCGgCAGUCGCUUCGu---GGCGC- -5'
30891 5' -58.8 NC_006552.1 + 36076 0.71 0.282787
Target:  5'- cUGUUGGUCGccacCAGcCGAAGCGCCgGCGu -3'
miRNA:   3'- aACAGCCGGCa---GUC-GCUUCGUGG-CGC- -5'
30891 5' -58.8 NC_006552.1 + 45363 0.72 0.262566
Target:  5'- aUGUCGGCCGguaucuggCAGCGcGGC-CCGgGc -3'
miRNA:   3'- aACAGCCGGCa-------GUCGCuUCGuGGCgC- -5'
30891 5' -58.8 NC_006552.1 + 8493 0.72 0.237452
Target:  5'- -cGUCGGCCGUCAGaCGcauGGCG-CGCu -3'
miRNA:   3'- aaCAGCCGGCAGUC-GCu--UCGUgGCGc -5'
30891 5' -58.8 NC_006552.1 + 41036 0.73 0.219962
Target:  5'- gUUGgcugCGGCCG-UAGgGAAGCGCuCGCGg -3'
miRNA:   3'- -AACa---GCCGGCaGUCgCUUCGUG-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.