miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30892 3' -56.6 NC_006552.1 + 3578 0.66 0.676074
Target:  5'- gCUGGCCGagccGCCGGCGcCGGCa------- -3'
miRNA:   3'- -GACUGGC----CGGCCGU-GCCGauauaguu -5'
30892 3' -56.6 NC_006552.1 + 28921 0.67 0.610586
Target:  5'- uCUGGaauCCGGCCGGCuCGGCa------- -3'
miRNA:   3'- -GACU---GGCCGGCCGuGCCGauauaguu -5'
30892 3' -56.6 NC_006552.1 + 60885 0.67 0.577959
Target:  5'- aUGugCGGCgcacCGGCGCuGGC-AUAUCGGg -3'
miRNA:   3'- gACugGCCG----GCCGUG-CCGaUAUAGUU- -5'
30892 3' -56.6 NC_006552.1 + 32702 0.68 0.514096
Target:  5'- --cGCCGGCCGGCGCGGggccgGUgGAg -3'
miRNA:   3'- gacUGGCCGGCCGUGCCgaua-UAgUU- -5'
30892 3' -56.6 NC_006552.1 + 31900 0.68 0.503716
Target:  5'- -cGGCCaGCgCGGCGCGGUUcggAUCGAa -3'
miRNA:   3'- gaCUGGcCG-GCCGUGCCGAua-UAGUU- -5'
30892 3' -56.6 NC_006552.1 + 44417 0.68 0.503716
Target:  5'- gCUG-CCGGCCGGCGaaacCGGCUcgAg--- -3'
miRNA:   3'- -GACuGGCCGGCCGU----GCCGAuaUaguu -5'
30892 3' -56.6 NC_006552.1 + 14094 0.69 0.493428
Target:  5'- -cGGCCGGCCGGgC-CGcGCUucAUGUCGc -3'
miRNA:   3'- gaCUGGCCGGCC-GuGC-CGA--UAUAGUu -5'
30892 3' -56.6 NC_006552.1 + 35388 0.69 0.463168
Target:  5'- -aGACUGGCCGGCGguucggucuUGGCUuUGUUGAu -3'
miRNA:   3'- gaCUGGCCGGCCGU---------GCCGAuAUAGUU- -5'
30892 3' -56.6 NC_006552.1 + 57031 0.7 0.41501
Target:  5'- -cGACCGGCCGaGCACGcugcaCUAcGUCGAu -3'
miRNA:   3'- gaCUGGCCGGC-CGUGCc----GAUaUAGUU- -5'
30892 3' -56.6 NC_006552.1 + 26806 0.7 0.405751
Target:  5'- cCUuGCCGGCCGGCGacaGGuCUAUGUUc- -3'
miRNA:   3'- -GAcUGGCCGGCCGUg--CC-GAUAUAGuu -5'
30892 3' -56.6 NC_006552.1 + 38389 0.71 0.353023
Target:  5'- -gGuCCGGCCGGCGCGGaaguUGUCc- -3'
miRNA:   3'- gaCuGGCCGGCCGUGCCgau-AUAGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.