miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30892 5' -55.4 NC_006552.1 + 34372 0.66 0.798458
Target:  5'- gCGuUCGAcgCGcGCGCCaGugCAGCAGc- -3'
miRNA:   3'- -GC-AGCUuaGC-CGCGG-CugGUUGUCcu -5'
30892 5' -55.4 NC_006552.1 + 8225 0.66 0.788936
Target:  5'- cCGcCGAagcgcagcauGUCGGCGCgGGCCAuggugucCAGGc -3'
miRNA:   3'- -GCaGCU----------UAGCCGCGgCUGGUu------GUCCu -5'
30892 5' -55.4 NC_006552.1 + 48694 0.66 0.759477
Target:  5'- --cCGggUUGGCGCCGuCCGGCc--- -3'
miRNA:   3'- gcaGCuuAGCCGCGGCuGGUUGuccu -5'
30892 5' -55.4 NC_006552.1 + 34057 0.67 0.728898
Target:  5'- ---aGGAUC-GCGCCGAUCAGCAGu- -3'
miRNA:   3'- gcagCUUAGcCGCGGCUGGUUGUCcu -5'
30892 5' -55.4 NC_006552.1 + 21143 0.67 0.708032
Target:  5'- gGUUGAcgggCGGCGgCGACgCGAUAGGc -3'
miRNA:   3'- gCAGCUua--GCCGCgGCUG-GUUGUCCu -5'
30892 5' -55.4 NC_006552.1 + 2667 0.67 0.708032
Target:  5'- --cCGcg-CGGCGCCGAUCAACGcucGGGu -3'
miRNA:   3'- gcaGCuuaGCCGCGGCUGGUUGU---CCU- -5'
30892 5' -55.4 NC_006552.1 + 21352 0.67 0.697487
Target:  5'- uGUUG-GUCGGCGCCGAuUCGACgcucAGGu -3'
miRNA:   3'- gCAGCuUAGCCGCGGCU-GGUUG----UCCu -5'
30892 5' -55.4 NC_006552.1 + 31401 0.68 0.686881
Target:  5'- cCGUCGg--CGGCGCCG-CCAgugguggucuucGCGGuGAg -3'
miRNA:   3'- -GCAGCuuaGCCGCGGCuGGU------------UGUC-CU- -5'
30892 5' -55.4 NC_006552.1 + 14254 0.68 0.686881
Target:  5'- uGUCGuAGUUGGCGCCGuaaccucgcACCAcguugcCGGGGg -3'
miRNA:   3'- gCAGC-UUAGCCGCGGC---------UGGUu-----GUCCU- -5'
30892 5' -55.4 NC_006552.1 + 51933 0.69 0.579688
Target:  5'- aCG-CGGAaauGCGCCG-CCAACAGGAg -3'
miRNA:   3'- -GCaGCUUagcCGCGGCuGGUUGUCCU- -5'
30892 5' -55.4 NC_006552.1 + 65089 0.7 0.558474
Target:  5'- aCGcCGc--CGGCGCCGGCaaacgaAGCGGGAg -3'
miRNA:   3'- -GCaGCuuaGCCGCGGCUGg-----UUGUCCU- -5'
30892 5' -55.4 NC_006552.1 + 19727 0.7 0.537485
Target:  5'- gCGUCGGccacGUUGGCGCUGGCCGcugcgcgcCAGGc -3'
miRNA:   3'- -GCAGCU----UAGCCGCGGCUGGUu-------GUCCu -5'
30892 5' -55.4 NC_006552.1 + 20017 0.72 0.44714
Target:  5'- gCGUCGAAcuugaccuucUCGGCGCCGAUCuGCucGGc -3'
miRNA:   3'- -GCAGCUU----------AGCCGCGGCUGGuUGu-CCu -5'
30892 5' -55.4 NC_006552.1 + 53583 0.73 0.400724
Target:  5'- aGUCGAugUGGCGCCGGCCAGuuCGGu- -3'
miRNA:   3'- gCAGCUuaGCCGCGGCUGGUU--GUCcu -5'
30892 5' -55.4 NC_006552.1 + 28726 0.74 0.349253
Target:  5'- uGUCGAucugCGGgaaGCCGGCCGGCGGcGAa -3'
miRNA:   3'- gCAGCUua--GCCg--CGGCUGGUUGUC-CU- -5'
30892 5' -55.4 NC_006552.1 + 61516 0.75 0.274359
Target:  5'- gGcCGAGUaCGGCGUCGAUCAcCAGGAc -3'
miRNA:   3'- gCaGCUUA-GCCGCGGCUGGUuGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.