miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30893 3' -54.7 NC_006552.1 + 26880 0.66 0.758903
Target:  5'- aGcGCGGCaucuUCGGCGACGUUguugaugccggccaGCGGc- -3'
miRNA:   3'- aC-CGCCGgu--AGCCGUUGUAA--------------UGCCau -5'
30893 3' -54.7 NC_006552.1 + 64495 0.66 0.751648
Target:  5'- cUGGCGGCCuggcaGGCGGgGUgcuuCGGa- -3'
miRNA:   3'- -ACCGCCGGuag--CCGUUgUAau--GCCau -5'
30893 3' -54.7 NC_006552.1 + 39008 0.67 0.71992
Target:  5'- -cGCGGCCAUCGgGCGACuuca-GGa- -3'
miRNA:   3'- acCGCCGGUAGC-CGUUGuaaugCCau -5'
30893 3' -54.7 NC_006552.1 + 41767 0.67 0.698308
Target:  5'- gGGC-GCCGUCGGaCAG-GUUGCGGg- -3'
miRNA:   3'- aCCGcCGGUAGCC-GUUgUAAUGCCau -5'
30893 3' -54.7 NC_006552.1 + 11936 0.67 0.687399
Target:  5'- cUGGCGcGCCAggcucgcuaggUCGGagcGCAUgGCGGUGu -3'
miRNA:   3'- -ACCGC-CGGU-----------AGCCgu-UGUAaUGCCAU- -5'
30893 3' -54.7 NC_006552.1 + 59395 0.67 0.676436
Target:  5'- aUGGaGGgCG-CGGCAGCGUcagGCGGUGg -3'
miRNA:   3'- -ACCgCCgGUaGCCGUUGUAa--UGCCAU- -5'
30893 3' -54.7 NC_006552.1 + 42793 0.67 0.676436
Target:  5'- aGGCGGUCAUCGaCAACGc--CGGg- -3'
miRNA:   3'- aCCGCCGGUAGCcGUUGUaauGCCau -5'
30893 3' -54.7 NC_006552.1 + 22608 0.68 0.63227
Target:  5'- gGGCGucGCCGaUGGCGACAUgcacggcgucGCGGUAg -3'
miRNA:   3'- aCCGC--CGGUaGCCGUUGUAa---------UGCCAU- -5'
30893 3' -54.7 NC_006552.1 + 4509 0.68 0.63227
Target:  5'- cGGCugccaGCCAUCGGCGAUGgccuCGGUc -3'
miRNA:   3'- aCCGc----CGGUAGCCGUUGUaau-GCCAu -5'
30893 3' -54.7 NC_006552.1 + 59769 0.68 0.621202
Target:  5'- cGGCGGCCGcaUCGGCuuucuGCuac-CGGUc -3'
miRNA:   3'- aCCGCCGGU--AGCCGu----UGuaauGCCAu -5'
30893 3' -54.7 NC_006552.1 + 5117 0.68 0.609039
Target:  5'- gGGCGGUCAUugCGGCAccugcacggcgauGCAUUGCGc-- -3'
miRNA:   3'- aCCGCCGGUA--GCCGU-------------UGUAAUGCcau -5'
30893 3' -54.7 NC_006552.1 + 59690 0.69 0.559664
Target:  5'- cGGCGGUgAUCGGCAAUccgcccuaccagGCGGa- -3'
miRNA:   3'- aCCGCCGgUAGCCGUUGuaa---------UGCCau -5'
30893 3' -54.7 NC_006552.1 + 28647 0.7 0.491628
Target:  5'- cGGCGGCCGUaGGCAAuCAUggcUGCaGUGg -3'
miRNA:   3'- aCCGCCGGUAgCCGUU-GUA---AUGcCAU- -5'
30893 3' -54.7 NC_006552.1 + 12231 0.72 0.421924
Target:  5'- gGGCGGCCAUCcGCGcACGgcgcuCGGUGu -3'
miRNA:   3'- aCCGCCGGUAGcCGU-UGUaau--GCCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.