Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30893 | 5' | -62.3 | NC_006552.1 | + | 63231 | 0.66 | 0.419187 |
Target: 5'- cGCGgC-ACGUGcGCCGGcUGUGCCUAu -3' miRNA: 3'- cCGUgGcUGCGC-CGGCCuACGCGGAU- -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 35916 | 0.66 | 0.410312 |
Target: 5'- aGGCguuguagcuuGCCuGCGCGGCCuGGGcuUGgGCCUu -3' miRNA: 3'- -CCG----------UGGcUGCGCCGG-CCU--ACgCGGAu -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 56721 | 0.66 | 0.401555 |
Target: 5'- cGGgACCGugGCGa--GGAacUGCGCCa- -3' miRNA: 3'- -CCgUGGCugCGCcggCCU--ACGCGGau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 50224 | 0.66 | 0.392918 |
Target: 5'- cGGCgAUCGAgGCGGCCcGAaGCGCa-- -3' miRNA: 3'- -CCG-UGGCUgCGCCGGcCUaCGCGgau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 21918 | 0.66 | 0.392918 |
Target: 5'- aGCGCCuGCaCGGCCuGAUGCGCg-- -3' miRNA: 3'- cCGUGGcUGcGCCGGcCUACGCGgau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 34631 | 0.66 | 0.384403 |
Target: 5'- uGGCAUCGGCGCuGGCaacgaagugaCGGuucuuggucgGCGCCUu -3' miRNA: 3'- -CCGUGGCUGCG-CCG----------GCCua--------CGCGGAu -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 57477 | 0.66 | 0.37601 |
Target: 5'- uGGCGCCGguACG-GGCuUGGAaaUGgGCCUGg -3' miRNA: 3'- -CCGUGGC--UGCgCCG-GCCU--ACgCGGAU- -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 32309 | 0.67 | 0.367743 |
Target: 5'- cGGCACaCGGCGuCGGCCuggcucucguGGAUcaGCCUGc -3' miRNA: 3'- -CCGUG-GCUGC-GCCGG----------CCUAcgCGGAU- -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 33656 | 0.67 | 0.367743 |
Target: 5'- cGGCACCGAaGUGGUCGGAaaucaccaguUGCagGUCUu -3' miRNA: 3'- -CCGUGGCUgCGCCGGCCU----------ACG--CGGAu -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 12853 | 0.67 | 0.359601 |
Target: 5'- uGC-CCGGCG-GGCCuGGAuuuccugcUGCGCCUc -3' miRNA: 3'- cCGuGGCUGCgCCGG-CCU--------ACGCGGAu -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 15466 | 0.67 | 0.351586 |
Target: 5'- cGGCGCCaGCGauacaGCCGGuugugcggcuUGCGCCUGc -3' miRNA: 3'- -CCGUGGcUGCgc---CGGCCu---------ACGCGGAU- -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 51397 | 0.67 | 0.351586 |
Target: 5'- aGUACgCGACGCuGCCGGA--CGCCa- -3' miRNA: 3'- cCGUG-GCUGCGcCGGCCUacGCGGau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 25982 | 0.67 | 0.341357 |
Target: 5'- uGCA-CGACGCGacacgcucaggcuuGCCGGAUcaGCGCCa- -3' miRNA: 3'- cCGUgGCUGCGC--------------CGGCCUA--CGCGGau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 32702 | 0.68 | 0.320806 |
Target: 5'- cGCcgGCCGGCGCggGGCCGGuggaGCGCUc- -3' miRNA: 3'- cCG--UGGCUGCG--CCGGCCua--CGCGGau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 62600 | 0.68 | 0.313433 |
Target: 5'- gGGCGCCGAgCGCGGCacguGGGUugaGUCUGc -3' miRNA: 3'- -CCGUGGCU-GCGCCGg---CCUAcg-CGGAU- -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 53522 | 0.68 | 0.313433 |
Target: 5'- aGGCucACCG-CGCGauGCCGGAcgcccaagccUGCGCCc- -3' miRNA: 3'- -CCG--UGGCuGCGC--CGGCCU----------ACGCGGau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 52648 | 0.68 | 0.306189 |
Target: 5'- aGGCACaUGAUcUGGCCGGAguaucgGCGCUg- -3' miRNA: 3'- -CCGUG-GCUGcGCCGGCCUa-----CGCGGau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 4149 | 0.69 | 0.2785 |
Target: 5'- uGUACCGAuCGCaaGGCUGGAUguucccGCGCCa- -3' miRNA: 3'- cCGUGGCU-GCG--CCGGCCUA------CGCGGau -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 45403 | 0.69 | 0.274523 |
Target: 5'- cGGCGCCGACGaauuccccgcccggGGCCGGc-GCaGCCUc -3' miRNA: 3'- -CCGUGGCUGCg-------------CCGGCCuaCG-CGGAu -5' |
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30893 | 5' | -62.3 | NC_006552.1 | + | 39428 | 0.69 | 0.252226 |
Target: 5'- cGCACgCGAucUGCGGCCGGAacgcuucggagcaUGCGCg-- -3' miRNA: 3'- cCGUG-GCU--GCGCCGGCCU-------------ACGCGgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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