miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30895 3' -59.2 NC_006552.1 + 32692 0.66 0.588935
Target:  5'- uUGGUGucgucGCCgGCCgGCGCGGggccGguGGa -3'
miRNA:   3'- -ACCGCuu---UGG-UGGgCGCGCCa---CguCC- -5'
30895 3' -59.2 NC_006552.1 + 53515 0.66 0.588935
Target:  5'- cUGGUGGAGgCucaCCGCGCGaUGCcGGa -3'
miRNA:   3'- -ACCGCUUUgGug-GGCGCGCcACGuCC- -5'
30895 3' -59.2 NC_006552.1 + 22539 0.66 0.588935
Target:  5'- cGGCGAGcgcgguauGCC-CCCaGCGgCGGcGCAGu -3'
miRNA:   3'- aCCGCUU--------UGGuGGG-CGC-GCCaCGUCc -5'
30895 3' -59.2 NC_006552.1 + 35916 0.66 0.578466
Target:  5'- aGGCGuuguAGCUugCCuGCGCGGccuggGCuuGGg -3'
miRNA:   3'- aCCGCu---UUGGugGG-CGCGCCa----CGu-CC- -5'
30895 3' -59.2 NC_006552.1 + 26234 0.66 0.577421
Target:  5'- gUGGCGAAACUgcgccggucgGCCCaGCucCGGUagcgucgGCAGGa -3'
miRNA:   3'- -ACCGCUUUGG----------UGGG-CGc-GCCA-------CGUCC- -5'
30895 3' -59.2 NC_006552.1 + 712 0.66 0.576377
Target:  5'- cUGGCGuAACCAacUCCGCGCcuucuccgcgacGUGCAGc -3'
miRNA:   3'- -ACCGCuUUGGU--GGGCGCGc-----------CACGUCc -5'
30895 3' -59.2 NC_006552.1 + 34796 0.66 0.551455
Target:  5'- aGGCGuccauGAACCACuUCGCcuucggacggccgagGCGGcGCAGGu -3'
miRNA:   3'- aCCGC-----UUUGGUG-GGCG---------------CGCCaCGUCC- -5'
30895 3' -59.2 NC_006552.1 + 20567 0.66 0.547331
Target:  5'- cUGGCGAGcAUC-CCCG-GCGGcauggagaaauUGCGGGc -3'
miRNA:   3'- -ACCGCUU-UGGuGGGCgCGCC-----------ACGUCC- -5'
30895 3' -59.2 NC_006552.1 + 14421 0.66 0.537067
Target:  5'- gUGGCGcc-CUGCCCGCugcuggcauCGGUGguGGa -3'
miRNA:   3'- -ACCGCuuuGGUGGGCGc--------GCCACguCC- -5'
30895 3' -59.2 NC_006552.1 + 12231 0.66 0.537067
Target:  5'- gGGCG--GCCAUCCGCGCacGGcGCucGGu -3'
miRNA:   3'- aCCGCuuUGGUGGGCGCG--CCaCGu-CC- -5'
30895 3' -59.2 NC_006552.1 + 15845 0.66 0.537067
Target:  5'- cGGCGAAcaaauuccagGCgGCCCuGCagauCGGUGaCAGGa -3'
miRNA:   3'- aCCGCUU----------UGgUGGG-CGc---GCCAC-GUCC- -5'
30895 3' -59.2 NC_006552.1 + 29809 0.67 0.52687
Target:  5'- cGGCGGGccGCCACCCaGCGUGacguUGCGa- -3'
miRNA:   3'- aCCGCUU--UGGUGGG-CGCGCc---ACGUcc -5'
30895 3' -59.2 NC_006552.1 + 56697 0.67 0.52687
Target:  5'- gUGGUGAAccuguuCCGCgUCGCGCGGgaccgugGCgAGGa -3'
miRNA:   3'- -ACCGCUUu-----GGUG-GGCGCGCCa------CG-UCC- -5'
30895 3' -59.2 NC_006552.1 + 31992 0.67 0.496741
Target:  5'- cGGCGugaaucuCCGgCUGCGCGGUGUc-- -3'
miRNA:   3'- aCCGCuuu----GGUgGGCGCGCCACGucc -5'
30895 3' -59.2 NC_006552.1 + 11443 0.67 0.49575
Target:  5'- cGGCGGGcgccucgcgcagcGCUacgaACUCGCGCaGUGCAGa -3'
miRNA:   3'- aCCGCUU-------------UGG----UGGGCGCGcCACGUCc -5'
30895 3' -59.2 NC_006552.1 + 26512 0.68 0.467413
Target:  5'- cGGCGccuGCCACCagcaGCGgCGGcGcCGGGg -3'
miRNA:   3'- aCCGCuu-UGGUGGg---CGC-GCCaC-GUCC- -5'
30895 3' -59.2 NC_006552.1 + 52950 0.68 0.42062
Target:  5'- cGGCGcccGCCGCCgGUGCGGcaucCGGGu -3'
miRNA:   3'- aCCGCuu-UGGUGGgCGCGCCac--GUCC- -5'
30895 3' -59.2 NC_006552.1 + 15591 0.69 0.393938
Target:  5'- gGGCGAAGCCGCgaGCaCGG-GCGGc -3'
miRNA:   3'- aCCGCUUUGGUGggCGcGCCaCGUCc -5'
30895 3' -59.2 NC_006552.1 + 2998 0.69 0.368378
Target:  5'- cGGCGAcaaCACCggagCGCGCGGaGCAGa -3'
miRNA:   3'- aCCGCUuugGUGG----GCGCGCCaCGUCc -5'
30895 3' -59.2 NC_006552.1 + 14643 0.7 0.351981
Target:  5'- cGGCuGAAcuCCGCCUGCGuCGGUuugaggguaucuGCGGGa -3'
miRNA:   3'- aCCG-CUUu-GGUGGGCGC-GCCA------------CGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.