Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30895 | 5' | -55.1 | NC_006552.1 | + | 56457 | 0.66 | 0.737586 |
Target: 5'- aUGCcucgUGGGCCGCCCugucagGCAGggcggCgUCCAg -3' miRNA: 3'- -AUGa---ACCCGGCGGG------CGUUaaa--G-AGGU- -5' |
|||||||
30895 | 5' | -55.1 | NC_006552.1 | + | 14391 | 0.66 | 0.705418 |
Target: 5'- gGCUUGGGCCucaCCUGCuucg-CUUCAa -3' miRNA: 3'- aUGAACCCGGc--GGGCGuuaaaGAGGU- -5' |
|||||||
30895 | 5' | -55.1 | NC_006552.1 | + | 35944 | 0.66 | 0.705418 |
Target: 5'- gGCUUGGGCCuUCCaguGCug-UUCUCCc -3' miRNA: 3'- aUGAACCCGGcGGG---CGuuaAAGAGGu -5' |
|||||||
30895 | 5' | -55.1 | NC_006552.1 | + | 13860 | 0.69 | 0.53626 |
Target: 5'- gUAC-UGGGCCagguaaucgGCCCGCAAUUcucguguggcuugCUCCAc -3' miRNA: 3'- -AUGaACCCGG---------CGGGCGUUAAa------------GAGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home