miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30898 3' -59.7 NC_006552.1 + 64720 0.66 0.517141
Target:  5'- uGCGCaUGCAAgacgacguGGCgGCgCUGCAGGUg -3'
miRNA:   3'- -UGCGgAUGUU--------CCGgUGgGACGUCCGg -5'
30898 3' -59.7 NC_006552.1 + 21477 0.66 0.517141
Target:  5'- uCGUCUGC-AGGCuCGCUCUccaGCGGGUa -3'
miRNA:   3'- uGCGGAUGuUCCG-GUGGGA---CGUCCGg -5'
30898 3' -59.7 NC_006552.1 + 7915 0.66 0.506981
Target:  5'- cACGCauCUGCucGGCCAUCUgGUuGGCCu -3'
miRNA:   3'- -UGCG--GAUGuuCCGGUGGGaCGuCCGG- -5'
30898 3' -59.7 NC_006552.1 + 53980 0.66 0.506981
Target:  5'- -aGCCUgaGCAggcAGGCCaggcgcgugGCCCUgGCccuGGCCg -3'
miRNA:   3'- ugCGGA--UGU---UCCGG---------UGGGA-CGu--CCGG- -5'
30898 3' -59.7 NC_006552.1 + 17014 0.66 0.506981
Target:  5'- uCGCCUccCGGGGCCggaaGCCgaGCAuGCCg -3'
miRNA:   3'- uGCGGAu-GUUCCGG----UGGgaCGUcCGG- -5'
30898 3' -59.7 NC_006552.1 + 15841 0.66 0.506981
Target:  5'- uUGCCgGCGaacaaauuccAGGCgGCCCUGCAGaUCg -3'
miRNA:   3'- uGCGGaUGU----------UCCGgUGGGACGUCcGG- -5'
30898 3' -59.7 NC_006552.1 + 63342 0.66 0.506981
Target:  5'- cACGCCgaccuagACGAccagggcaacccGGuCCGCaCCUGCGucGGCCa -3'
miRNA:   3'- -UGCGGa------UGUU------------CC-GGUG-GGACGU--CCGG- -5'
30898 3' -59.7 NC_006552.1 + 27372 0.66 0.50597
Target:  5'- -aGCCgGCAgaccagcAGGCCgaACUguUUGCGGGCCg -3'
miRNA:   3'- ugCGGaUGU-------UCCGG--UGG--GACGUCCGG- -5'
30898 3' -59.7 NC_006552.1 + 33844 0.66 0.496908
Target:  5'- cCGCCgaacuGGCCGCCgaGCGGGa- -3'
miRNA:   3'- uGCGGauguuCCGGUGGgaCGUCCgg -5'
30898 3' -59.7 NC_006552.1 + 7595 0.66 0.486925
Target:  5'- -aGCCUcggaAAGGUCGCCCaugUGCAGaCCg -3'
miRNA:   3'- ugCGGAug--UUCCGGUGGG---ACGUCcGG- -5'
30898 3' -59.7 NC_006552.1 + 60277 0.66 0.486925
Target:  5'- cCGCCgc----GCCACCCgGCuGGCCc -3'
miRNA:   3'- uGCGGauguucCGGUGGGaCGuCCGG- -5'
30898 3' -59.7 NC_006552.1 + 58812 0.66 0.486925
Target:  5'- cAUGCCUugGGGGUCugCaCaGCcuucaucgaacAGGCCa -3'
miRNA:   3'- -UGCGGAugUUCCGGugG-GaCG-----------UCCGG- -5'
30898 3' -59.7 NC_006552.1 + 18668 0.66 0.477038
Target:  5'- -aGCCUGCAuccuuGCCGCUCUGgCuGGGUCa -3'
miRNA:   3'- ugCGGAUGUuc---CGGUGGGAC-G-UCCGG- -5'
30898 3' -59.7 NC_006552.1 + 24708 0.66 0.477038
Target:  5'- aGCGCCgcuuuCGggucguAGGCCACCagccgGCgccGGGCCu -3'
miRNA:   3'- -UGCGGau---GU------UCCGGUGGga---CG---UCCGG- -5'
30898 3' -59.7 NC_006552.1 + 39604 0.66 0.477038
Target:  5'- aGCGCCgggccgAUcAGGUCuuCCaCUGCGGGCg -3'
miRNA:   3'- -UGCGGa-----UGuUCCGGu-GG-GACGUCCGg -5'
30898 3' -59.7 NC_006552.1 + 61770 0.67 0.467252
Target:  5'- -gGCCUguuGCGGuggcGGCCuCCCUcaaccacaaGCAGGCCc -3'
miRNA:   3'- ugCGGA---UGUU----CCGGuGGGA---------CGUCCGG- -5'
30898 3' -59.7 NC_006552.1 + 35902 0.67 0.466279
Target:  5'- cUGCCUcaucccGCAGGcguuguaGCUugCCUGCGcGGCCu -3'
miRNA:   3'- uGCGGA------UGUUC-------CGGugGGACGU-CCGG- -5'
30898 3' -59.7 NC_006552.1 + 10396 0.67 0.45757
Target:  5'- uCGCC---GAGGCCACCUcggUGCGcGGCa -3'
miRNA:   3'- uGCGGaugUUCCGGUGGG---ACGU-CCGg -5'
30898 3' -59.7 NC_006552.1 + 10625 0.67 0.456607
Target:  5'- gGCGCCaGCAGucucaccGGCCACggcgaUGCuGGCCu -3'
miRNA:   3'- -UGCGGaUGUU-------CCGGUGgg---ACGuCCGG- -5'
30898 3' -59.7 NC_006552.1 + 21414 0.67 0.447996
Target:  5'- aGCGUgaACGugaAGuGCCugCCgcGCAGGCCc -3'
miRNA:   3'- -UGCGgaUGU---UC-CGGugGGa-CGUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.