miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30901 3' -57.7 NC_006552.1 + 56727 0.66 0.649744
Target:  5'- cGUGGcgAGGAaCUGCgccaGGCCCuGGCGCUu -3'
miRNA:   3'- -CACC--UCUUgGACGa---CCGGGcUUGCGG- -5'
30901 3' -57.7 NC_006552.1 + 54003 0.66 0.649744
Target:  5'- cGUGGc---CCUGgccCUGGCCgCGAGcCGCCa -3'
miRNA:   3'- -CACCucuuGGAC---GACCGG-GCUU-GCGG- -5'
30901 3' -57.7 NC_006552.1 + 18747 0.66 0.639015
Target:  5'- aGUGGuccGGCCUGUgcaaUGGCCUGuuGCuGCCg -3'
miRNA:   3'- -CACCuc-UUGGACG----ACCGGGCu-UG-CGG- -5'
30901 3' -57.7 NC_006552.1 + 15524 0.66 0.637942
Target:  5'- ----uGGGCCUGCUGGaugucguCCUGcACGCCg -3'
miRNA:   3'- caccuCUUGGACGACC-------GGGCuUGCGG- -5'
30901 3' -57.7 NC_006552.1 + 59870 0.66 0.628281
Target:  5'- -cGcGGAACCUGUcgagGGCCUGAcgaaGCCg -3'
miRNA:   3'- caCcUCUUGGACGa---CCGGGCUug--CGG- -5'
30901 3' -57.7 NC_006552.1 + 12865 0.66 0.600408
Target:  5'- cUGGAuuuCCUGCUGcGCCuCGGcgaccucggcggcguGCGCCu -3'
miRNA:   3'- cACCUcuuGGACGAC-CGG-GCU---------------UGCGG- -5'
30901 3' -57.7 NC_006552.1 + 37832 0.66 0.596131
Target:  5'- cUGGGcgccGGCCUGCaUGGCaCUGAAUGCg -3'
miRNA:   3'- cACCUc---UUGGACG-ACCG-GGCUUGCGg -5'
30901 3' -57.7 NC_006552.1 + 2771 0.67 0.57483
Target:  5'- aGUGGGuGGCCgaggGCgGGCCgCGGAaacaGCCg -3'
miRNA:   3'- -CACCUcUUGGa---CGaCCGG-GCUUg---CGG- -5'
30901 3' -57.7 NC_006552.1 + 64116 0.67 0.568471
Target:  5'- -cGGAcGACCgcaaGCUGuGCCUGAuucgcaacgcagcucGCGCCg -3'
miRNA:   3'- caCCUcUUGGa---CGAC-CGGGCU---------------UGCGG- -5'
30901 3' -57.7 NC_006552.1 + 38005 0.67 0.543231
Target:  5'- cUGGAucugcuccgGggUCUGCUguugaucaacGGCCCGgAugGCCu -3'
miRNA:   3'- cACCU---------CuuGGACGA----------CCGGGC-UugCGG- -5'
30901 3' -57.7 NC_006552.1 + 38943 0.68 0.48197
Target:  5'- -cGGAGAAa-UGC-GG-CCGGACGCCa -3'
miRNA:   3'- caCCUCUUggACGaCCgGGCUUGCGG- -5'
30901 3' -57.7 NC_006552.1 + 16820 0.69 0.42425
Target:  5'- cUGGA--GCCaGC--GCCCGAACGCCa -3'
miRNA:   3'- cACCUcuUGGaCGacCGGGCUUGCGG- -5'
30901 3' -57.7 NC_006552.1 + 53507 0.72 0.291862
Target:  5'- -gGGAGGACCUGgUggaGGCucaccgcgcgaugCCGGACGCCc -3'
miRNA:   3'- caCCUCUUGGACgA---CCG-------------GGCUUGCGG- -5'
30901 3' -57.7 NC_006552.1 + 55222 0.77 0.145654
Target:  5'- --cGAGAACCUGCUGGCCgaccucaaCGAaagcuacaACGCCa -3'
miRNA:   3'- cacCUCUUGGACGACCGG--------GCU--------UGCGG- -5'
30901 3' -57.7 NC_006552.1 + 63657 0.8 0.084074
Target:  5'- --cGAGAGCCUGCUGGCCaUGAucaaggaccagGCGCCg -3'
miRNA:   3'- cacCUCUUGGACGACCGG-GCU-----------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.