Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30902 | 3' | -54 | NC_006552.1 | + | 10830 | 0.67 | 0.779064 |
Target: 5'- gGCGGUuguUCGCCGGgcuGCGGcGCuGccGACu -3' miRNA: 3'- gCGCCA---AGCGGCU---UGCC-CGuCaaUUG- -5' |
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30902 | 3' | -54 | NC_006552.1 | + | 29801 | 0.68 | 0.717222 |
Target: 5'- --aGGUUCGCCG-GCGGGCcgccacccAGcgUGACg -3' miRNA: 3'- gcgCCAAGCGGCuUGCCCG--------UCa-AUUG- -5' |
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30902 | 3' | -54 | NC_006552.1 | + | 26284 | 0.68 | 0.695822 |
Target: 5'- cCGUGGccgCGCCcAGCGGGUAGUc--- -3' miRNA: 3'- -GCGCCaa-GCGGcUUGCCCGUCAauug -5' |
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30902 | 3' | -54 | NC_006552.1 | + | 28253 | 0.7 | 0.619562 |
Target: 5'- gCGCGGaUCGCCGAACaGGUcuuuGUgcGCc -3' miRNA: 3'- -GCGCCaAGCGGCUUGcCCGu---CAauUG- -5' |
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30902 | 3' | -54 | NC_006552.1 | + | 33261 | 0.7 | 0.608633 |
Target: 5'- gGUGGcgccaccuugUCGCCGAugGCGaGGCAGUaGGCg -3' miRNA: 3'- gCGCCa---------AGCGGCU--UGC-CCGUCAaUUG- -5' |
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30902 | 3' | -54 | NC_006552.1 | + | 17824 | 0.73 | 0.413217 |
Target: 5'- cCGaacaGGUU-GUCGAucugGCGGGCAGUUAACu -3' miRNA: 3'- -GCg---CCAAgCGGCU----UGCCCGUCAAUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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