miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30903 5' -58.8 NC_006552.1 + 13166 0.66 0.551645
Target:  5'- gGGCGucGCgGGCGUUCugcguacgcucgaAUGCCuGGCGGAa -3'
miRNA:   3'- -UCGCu-UGaCCGCAGG-------------UACGG-CCGCUU- -5'
30903 5' -58.8 NC_006552.1 + 11797 0.66 0.531738
Target:  5'- cGGCGAACUGGUcaCC--GCgGGUGAAg -3'
miRNA:   3'- -UCGCUUGACCGcaGGuaCGgCCGCUU- -5'
30903 5' -58.8 NC_006552.1 + 19677 0.67 0.500862
Target:  5'- aAGCGAugUugguccGGCuGUUCAUGUCGGCa-- -3'
miRNA:   3'- -UCGCUugA------CCG-CAGGUACGGCCGcuu -5'
30903 5' -58.8 NC_006552.1 + 58295 0.67 0.460986
Target:  5'- gGGCGAACUGGC--CCA-GUCGGCc-- -3'
miRNA:   3'- -UCGCUUGACCGcaGGUaCGGCCGcuu -5'
30903 5' -58.8 NC_006552.1 + 51029 0.67 0.460986
Target:  5'- gAGCGc-CUGGC--CgAUGCCGGCGAu -3'
miRNA:   3'- -UCGCuuGACCGcaGgUACGGCCGCUu -5'
30903 5' -58.8 NC_006552.1 + 34427 0.67 0.460986
Target:  5'- uGGCGaAGCUGuuGUaCUggGCCGGCGAGc -3'
miRNA:   3'- -UCGC-UUGACcgCA-GGuaCGGCCGCUU- -5'
30903 5' -58.8 NC_006552.1 + 56255 0.69 0.386674
Target:  5'- cGCaGAACUGGCaG-CCAagGCCGGCGu- -3'
miRNA:   3'- uCG-CUUGACCG-CaGGUa-CGGCCGCuu -5'
30903 5' -58.8 NC_006552.1 + 29198 0.69 0.369367
Target:  5'- -aCGAACUGGCGUUCGUGgcugaugCGGUGGAc -3'
miRNA:   3'- ucGCUUGACCGCAGGUACg------GCCGCUU- -5'
30903 5' -58.8 NC_006552.1 + 39728 0.69 0.368515
Target:  5'- aGGCGGGCUGGUccucgauuucguaGUUgAUGUCGGCGu- -3'
miRNA:   3'- -UCGCUUGACCG-------------CAGgUACGGCCGCuu -5'
30903 5' -58.8 NC_006552.1 + 25329 0.7 0.336374
Target:  5'- gGGCGGguagcGCUGGUGUaacccucggUCAUGCUGGUGAu -3'
miRNA:   3'- -UCGCU-----UGACCGCA---------GGUACGGCCGCUu -5'
30903 5' -58.8 NC_006552.1 + 8247 0.7 0.313073
Target:  5'- cGCGGGCcaUGGUGUCCAggcuacgGUCGGUGGc -3'
miRNA:   3'- uCGCUUG--ACCGCAGGUa------CGGCCGCUu -5'
30903 5' -58.8 NC_006552.1 + 62965 0.71 0.270196
Target:  5'- -aCGAACUGGcCGgcgCCGuucuucUGCCGGCGGAc -3'
miRNA:   3'- ucGCUUGACC-GCa--GGU------ACGGCCGCUU- -5'
30903 5' -58.8 NC_006552.1 + 11262 0.72 0.236367
Target:  5'- cGCGGAUcgcgucggccaauaUGGC--CCAUGCCGGCGGAa -3'
miRNA:   3'- uCGCUUG--------------ACCGcaGGUACGGCCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.