miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30904 5' -54.6 NC_006552.1 + 64163 0.66 0.783936
Target:  5'- cUGGCGCAcgcGCcGACCAGUUcGGcauccccgucgUGCAa- -3'
miRNA:   3'- -ACCGCGU---UGaCUGGUCAA-CC-----------ACGUcg -5'
30904 5' -54.6 NC_006552.1 + 26234 0.66 0.763725
Target:  5'- gUGGCGaAACUGcGCCGGUcGGccCAGCu -3'
miRNA:   3'- -ACCGCgUUGAC-UGGUCAaCCacGUCG- -5'
30904 5' -54.6 NC_006552.1 + 40150 0.67 0.711012
Target:  5'- aUGGCG-AACUGcucGCCAGgcaucaGGUcuuGCAGCa -3'
miRNA:   3'- -ACCGCgUUGAC---UGGUCaa----CCA---CGUCG- -5'
30904 5' -54.6 NC_006552.1 + 63917 0.68 0.667361
Target:  5'- cUGGUucGCAuGCUGGCCAGUuccuUGaaGCGGCa -3'
miRNA:   3'- -ACCG--CGU-UGACUGGUCA----ACcaCGUCG- -5'
30904 5' -54.6 NC_006552.1 + 25191 0.68 0.667361
Target:  5'- gUGGUGCcACccuugGugCuGUUGGUcaGCAGCg -3'
miRNA:   3'- -ACCGCGuUGa----CugGuCAACCA--CGUCG- -5'
30904 5' -54.6 NC_006552.1 + 22923 0.68 0.656337
Target:  5'- cGGCGaagucGCUGAuuUCGGUUGGgcUGUAGCc -3'
miRNA:   3'- aCCGCgu---UGACU--GGUCAACC--ACGUCG- -5'
30904 5' -54.6 NC_006552.1 + 43877 0.68 0.645291
Target:  5'- cUGGCccauGCggUgGACCAGgcGGUGCuuGCg -3'
miRNA:   3'- -ACCG----CGuuGaCUGGUCaaCCACGu-CG- -5'
30904 5' -54.6 NC_006552.1 + 59400 0.69 0.61212
Target:  5'- gGGCGCGGCagcgUCAGgcGGUgGCGGCg -3'
miRNA:   3'- aCCGCGUUGacu-GGUCaaCCA-CGUCG- -5'
30904 5' -54.6 NC_006552.1 + 18836 0.69 0.590076
Target:  5'- cGGCGCAACaccUGGCUGGagcuuUGCAGCa -3'
miRNA:   3'- aCCGCGUUG---ACUGGUCaacc-ACGUCG- -5'
30904 5' -54.6 NC_006552.1 + 5298 0.69 0.579104
Target:  5'- cGGCGCAucgaGCUaccgcGCCAGUUGGUGauGCc -3'
miRNA:   3'- aCCGCGU----UGAc----UGGUCAACCACguCG- -5'
30904 5' -54.6 NC_006552.1 + 34614 0.69 0.5573
Target:  5'- cGGCGCAAC--GCCAGUgaUGGcauCGGCg -3'
miRNA:   3'- aCCGCGUUGacUGGUCA--ACCac-GUCG- -5'
30904 5' -54.6 NC_006552.1 + 21168 0.71 0.473048
Target:  5'- aGGCGCAuCcGGCCGcGUcGGUGcCGGCa -3'
miRNA:   3'- aCCGCGUuGaCUGGU-CAaCCAC-GUCG- -5'
30904 5' -54.6 NC_006552.1 + 15466 0.71 0.44311
Target:  5'- cGGCGcCAGCgauacaGCCGGUU-GUGCGGCu -3'
miRNA:   3'- aCCGC-GUUGac----UGGUCAAcCACGUCG- -5'
30904 5' -54.6 NC_006552.1 + 53590 0.72 0.404914
Target:  5'- gUGGCGCc---GGCCAGUUcGGUGCcGCc -3'
miRNA:   3'- -ACCGCGuugaCUGGUCAA-CCACGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.