Results 21 - 40 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30906 | 5' | -63.6 | NC_006552.1 | + | 29069 | 0.66 | 0.33733 |
Target: 5'- aAGCgCGUGCCGCCGaCCauaGGucugGCCacGGCa -3' miRNA: 3'- -UCGaGCGCGGUGGC-GG---CCua--CGG--CCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 20670 | 0.66 | 0.33733 |
Target: 5'- gGGCgaacaGCGCCugCucgaUGGgcGCCGGCa -3' miRNA: 3'- -UCGag---CGCGGugGcg--GCCuaCGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 11300 | 0.66 | 0.33733 |
Target: 5'- aGGCUCcaGCacguccauGCCuCC-CUGGAUGUCGGCg -3' miRNA: 3'- -UCGAG--CG--------CGGuGGcGGCCUACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 16087 | 0.66 | 0.329758 |
Target: 5'- uGCUCggaGCGCUuugggGCCGCCGGGa-CCGGa -3' miRNA: 3'- uCGAG---CGCGG-----UGGCGGCCUacGGCCg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 53601 | 0.67 | 0.322312 |
Target: 5'- cAGUUCgGUGCCGCCgGCUGaGGUGgaGGCc -3' miRNA: 3'- -UCGAG-CGCGGUGG-CGGC-CUACggCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 51396 | 0.67 | 0.322312 |
Target: 5'- aAGUaCGCGaCGCUGCCGGAcGCCaauaccgccgauGGCu -3' miRNA: 3'- -UCGaGCGCgGUGGCGGCCUaCGG------------CCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 35286 | 0.67 | 0.314992 |
Target: 5'- gGGCUCaUGCCGcgcagggcguCCGacaUGGAUGCCGGa -3' miRNA: 3'- -UCGAGcGCGGU----------GGCg--GCCUACGGCCg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 26187 | 0.67 | 0.314992 |
Target: 5'- cGCcCGCGCCAgUagGCCaGGugcuUGCCGGUc -3' miRNA: 3'- uCGaGCGCGGUgG--CGG-CCu---ACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 44451 | 0.67 | 0.314992 |
Target: 5'- uGUUCGagcaGCaacugCGCUGCCGGc-GCCGGCa -3' miRNA: 3'- uCGAGCg---CG-----GUGGCGGCCuaCGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 64756 | 0.67 | 0.314267 |
Target: 5'- cGCUcaacaucguccaaCGCGCCACCGacgccCUGGGcauccUGCCGGa -3' miRNA: 3'- uCGA-------------GCGCGGUGGC-----GGCCU-----ACGGCCg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 13305 | 0.67 | 0.313543 |
Target: 5'- gGGCUUggGUGCCuCUGCCGGuucggacugggGCCGGg -3' miRNA: 3'- -UCGAG--CGCGGuGGCGGCCua---------CGGCCg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 13997 | 0.67 | 0.307798 |
Target: 5'- cGCUCGCugGCUGCUGCuguucgagauacCGGAguaGCUGGCu -3' miRNA: 3'- uCGAGCG--CGGUGGCG------------GCCUa--CGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 65031 | 0.67 | 0.307798 |
Target: 5'- uGGC-CGCGCCACuCGCUGG--GCagaGGUu -3' miRNA: 3'- -UCGaGCGCGGUG-GCGGCCuaCGg--CCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 26859 | 0.67 | 0.304249 |
Target: 5'- gGGCUCuCGCCGCCGCguugcagcgcggcauCuucggcgacguuguuGAUGCCGGCc -3' miRNA: 3'- -UCGAGcGCGGUGGCG---------------Gc--------------CUACGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 25841 | 0.67 | 0.29379 |
Target: 5'- cGGCgaugGCGCCACUGCUGG-UGCCc-- -3' miRNA: 3'- -UCGag--CGCGGUGGCGGCCuACGGccg -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 12937 | 0.67 | 0.286974 |
Target: 5'- aAGCUCG-GCCAgCgCGCUGGccuugGCCuGGCg -3' miRNA: 3'- -UCGAGCgCGGU-G-GCGGCCua---CGG-CCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 26336 | 0.67 | 0.286974 |
Target: 5'- cGCUCGCGUCagguagaggcGCgCGCCGGucacaCUGGCa -3' miRNA: 3'- uCGAGCGCGG----------UG-GCGGCCuac--GGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 38374 | 0.68 | 0.273717 |
Target: 5'- cAGUUCGC-CCACCa--GGGUccgGCCGGCg -3' miRNA: 3'- -UCGAGCGcGGUGGcggCCUA---CGGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 44665 | 0.68 | 0.273717 |
Target: 5'- cGGCUaccacaGCCGCCuGCUGGAUuuCCGGCg -3' miRNA: 3'- -UCGAgcg---CGGUGG-CGGCCUAc-GGCCG- -5' |
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30906 | 5' | -63.6 | NC_006552.1 | + | 2896 | 0.68 | 0.267275 |
Target: 5'- gGGUUCGUcaucaUCACCGCCGauagcGCCGGCg -3' miRNA: 3'- -UCGAGCGc----GGUGGCGGCcua--CGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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