miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30907 5' -55.5 NC_006552.1 + 26274 0.66 0.743597
Target:  5'- gGCAGGAUGAccgugGCcGCGCCcagcggguagucGCCGGccAACa -3'
miRNA:   3'- -CGUCCUACU-----CGuCGCGG------------UGGUC--UUGc -5'
30907 5' -55.5 NC_006552.1 + 51917 0.66 0.712074
Target:  5'- cGCAuGGAgGAGCAagacgcggaaauGCGCCGCCAacaGGAgGa -3'
miRNA:   3'- -CGU-CCUaCUCGU------------CGCGGUGGU---CUUgC- -5'
30907 5' -55.5 NC_006552.1 + 38905 0.66 0.712074
Target:  5'- cCAGuagGAGCGGCGC-ACCGGGAUa -3'
miRNA:   3'- cGUCcuaCUCGUCGCGgUGGUCUUGc -5'
30907 5' -55.5 NC_006552.1 + 53576 0.67 0.701397
Target:  5'- uGCAGGGagucGAuGUGGCGCCgGCCAGuuCGg -3'
miRNA:   3'- -CGUCCUa---CU-CGUCGCGG-UGGUCuuGC- -5'
30907 5' -55.5 NC_006552.1 + 5072 0.67 0.679855
Target:  5'- cCAGGcc-AGcCAGCGCUaucgcaGCCAGAACGg -3'
miRNA:   3'- cGUCCuacUC-GUCGCGG------UGGUCUUGC- -5'
30907 5' -55.5 NC_006552.1 + 31397 0.67 0.669011
Target:  5'- cGCAccGUcGGCGGCGCCGCCAGugGugGu -3'
miRNA:   3'- -CGUccUAcUCGUCGCGGUGGUC--UugC- -5'
30907 5' -55.5 NC_006552.1 + 21893 0.67 0.669011
Target:  5'- gGCAauGGAUGccccguccaccAGCAGCGCCugCAcGGCc -3'
miRNA:   3'- -CGU--CCUAC-----------UCGUCGCGGugGUcUUGc -5'
30907 5' -55.5 NC_006552.1 + 39634 0.67 0.658134
Target:  5'- gGCGGGAUGccCAGUGCCugCuG-GCGa -3'
miRNA:   3'- -CGUCCUACucGUCGCGGugGuCuUGC- -5'
30907 5' -55.5 NC_006552.1 + 19238 0.67 0.647232
Target:  5'- gGCAuGAUGuAGgAGC-CCGCCGGAACu -3'
miRNA:   3'- -CGUcCUAC-UCgUCGcGGUGGUCUUGc -5'
30907 5' -55.5 NC_006552.1 + 3013 0.68 0.636317
Target:  5'- aGCGcGcgGAGCAGaucgugcuCCACCAGGGCGa -3'
miRNA:   3'- -CGUcCuaCUCGUCgc------GGUGGUCUUGC- -5'
30907 5' -55.5 NC_006552.1 + 13296 0.68 0.614486
Target:  5'- cGCGGGAUcGGGCuugGGUGCCucuGCCGGuuCGg -3'
miRNA:   3'- -CGUCCUA-CUCG---UCGCGG---UGGUCuuGC- -5'
30907 5' -55.5 NC_006552.1 + 21856 0.69 0.538999
Target:  5'- cCAGGuc--GC-GCGCCGCCAGAugGu -3'
miRNA:   3'- cGUCCuacuCGuCGCGGUGGUCUugC- -5'
30907 5' -55.5 NC_006552.1 + 4489 0.7 0.517959
Target:  5'- aGCAGGAUaggcgcaccGAGCGGCugccaGCCAUCGGcGAUGg -3'
miRNA:   3'- -CGUCCUA---------CUCGUCG-----CGGUGGUC-UUGC- -5'
30907 5' -55.5 NC_006552.1 + 3577 0.7 0.507561
Target:  5'- uGCuGGccGAGCcgccGGCGCCGgCAGGACu -3'
miRNA:   3'- -CGuCCuaCUCG----UCGCGGUgGUCUUGc -5'
30907 5' -55.5 NC_006552.1 + 56851 0.73 0.339782
Target:  5'- -aGGGAUucGGCAGCGCCGCgGcGAGCGg -3'
miRNA:   3'- cgUCCUAc-UCGUCGCGGUGgU-CUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.