Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30907 | 5' | -55.5 | NC_006552.1 | + | 26274 | 0.66 | 0.743597 |
Target: 5'- gGCAGGAUGAccgugGCcGCGCCcagcggguagucGCCGGccAACa -3' miRNA: 3'- -CGUCCUACU-----CGuCGCGG------------UGGUC--UUGc -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 38905 | 0.66 | 0.712074 |
Target: 5'- cCAGuagGAGCGGCGC-ACCGGGAUa -3' miRNA: 3'- cGUCcuaCUCGUCGCGgUGGUCUUGc -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 51917 | 0.66 | 0.712074 |
Target: 5'- cGCAuGGAgGAGCAagacgcggaaauGCGCCGCCAacaGGAgGa -3' miRNA: 3'- -CGU-CCUaCUCGU------------CGCGGUGGU---CUUgC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 53576 | 0.67 | 0.701397 |
Target: 5'- uGCAGGGagucGAuGUGGCGCCgGCCAGuuCGg -3' miRNA: 3'- -CGUCCUa---CU-CGUCGCGG-UGGUCuuGC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 5072 | 0.67 | 0.679855 |
Target: 5'- cCAGGcc-AGcCAGCGCUaucgcaGCCAGAACGg -3' miRNA: 3'- cGUCCuacUC-GUCGCGG------UGGUCUUGC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 21893 | 0.67 | 0.669011 |
Target: 5'- gGCAauGGAUGccccguccaccAGCAGCGCCugCAcGGCc -3' miRNA: 3'- -CGU--CCUAC-----------UCGUCGCGGugGUcUUGc -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 31397 | 0.67 | 0.669011 |
Target: 5'- cGCAccGUcGGCGGCGCCGCCAGugGugGu -3' miRNA: 3'- -CGUccUAcUCGUCGCGGUGGUC--UugC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 39634 | 0.67 | 0.658134 |
Target: 5'- gGCGGGAUGccCAGUGCCugCuG-GCGa -3' miRNA: 3'- -CGUCCUACucGUCGCGGugGuCuUGC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 19238 | 0.67 | 0.647232 |
Target: 5'- gGCAuGAUGuAGgAGC-CCGCCGGAACu -3' miRNA: 3'- -CGUcCUAC-UCgUCGcGGUGGUCUUGc -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 3013 | 0.68 | 0.636317 |
Target: 5'- aGCGcGcgGAGCAGaucgugcuCCACCAGGGCGa -3' miRNA: 3'- -CGUcCuaCUCGUCgc------GGUGGUCUUGC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 13296 | 0.68 | 0.614486 |
Target: 5'- cGCGGGAUcGGGCuugGGUGCCucuGCCGGuuCGg -3' miRNA: 3'- -CGUCCUA-CUCG---UCGCGG---UGGUCuuGC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 21856 | 0.69 | 0.538999 |
Target: 5'- cCAGGuc--GC-GCGCCGCCAGAugGu -3' miRNA: 3'- cGUCCuacuCGuCGCGGUGGUCUugC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 4489 | 0.7 | 0.517959 |
Target: 5'- aGCAGGAUaggcgcaccGAGCGGCugccaGCCAUCGGcGAUGg -3' miRNA: 3'- -CGUCCUA---------CUCGUCG-----CGGUGGUC-UUGC- -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 3577 | 0.7 | 0.507561 |
Target: 5'- uGCuGGccGAGCcgccGGCGCCGgCAGGACu -3' miRNA: 3'- -CGuCCuaCUCG----UCGCGGUgGUCUUGc -5' |
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30907 | 5' | -55.5 | NC_006552.1 | + | 56851 | 0.73 | 0.339782 |
Target: 5'- -aGGGAUucGGCAGCGCCGCgGcGAGCGg -3' miRNA: 3'- cgUCCUAc-UCGUCGCGGUGgU-CUUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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