miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30908 3' -60.7 NC_006552.1 + 13720 0.68 0.363691
Target:  5'- uUGGccuucuGCCAGGCcacgaaugugucgauGGCGCGGUcGUAGGCg -3'
miRNA:   3'- -ACC------UGGUCCG---------------CCGCGUCGuCGUUCGg -5'
30908 3' -60.7 NC_006552.1 + 51983 0.68 0.355445
Target:  5'- cUGGcacGCCAGcagcgagagcuugccGCGGCGCGcCAGCAAcucGCCg -3'
miRNA:   3'- -ACC---UGGUC---------------CGCCGCGUcGUCGUU---CGG- -5'
30908 3' -60.7 NC_006552.1 + 49003 0.68 0.344123
Target:  5'- gGGcaaGCCcGGCGGCGCG--AGCGuucAGCCg -3'
miRNA:   3'- aCC---UGGuCCGCCGCGUcgUCGU---UCGG- -5'
30908 3' -60.7 NC_006552.1 + 39776 0.68 0.328403
Target:  5'- cGG-UCA-GCGGCGUgucgcccgcaGGUGGCAAGCCg -3'
miRNA:   3'- aCCuGGUcCGCCGCG----------UCGUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 6770 0.68 0.328403
Target:  5'- -cGAUCAGGUcuucGGCGUcuucGGCgaacGGCAAGCCa -3'
miRNA:   3'- acCUGGUCCG----CCGCG----UCG----UCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 20440 0.69 0.31322
Target:  5'- aGGGCCAGGCccugcugcacGGCGaAGC-GCAGGUUc -3'
miRNA:   3'- aCCUGGUCCG----------CCGCgUCGuCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 61370 0.69 0.291454
Target:  5'- gGGAgCCGGGCcauguuuuGGCGCgccGGCGGC-GGCUa -3'
miRNA:   3'- aCCU-GGUCCG--------CCGCG---UCGUCGuUCGG- -5'
30908 3' -60.7 NC_006552.1 + 12959 0.69 0.291454
Target:  5'- uUGG-CCuGGCGGUGCguucgaGGcCAGC-AGCCg -3'
miRNA:   3'- -ACCuGGuCCGCCGCG------UC-GUCGuUCGG- -5'
30908 3' -60.7 NC_006552.1 + 61126 0.69 0.284466
Target:  5'- aGGACaucagcgaagagCAGGCGuuggcagagggaGUGC-GCGGCGAGCCa -3'
miRNA:   3'- aCCUG------------GUCCGC------------CGCGuCGUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 53993 0.7 0.264298
Target:  5'- -aGGCCAGGC-GCGUggcccuggcccuGGCcGCGAGCCg -3'
miRNA:   3'- acCUGGUCCGcCGCG------------UCGuCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 8419 0.7 0.263647
Target:  5'- gGGGCuCAGGCcgcgccaGGCGC-GCAGCAGuCCc -3'
miRNA:   3'- aCCUG-GUCCG-------CCGCGuCGUCGUUcGG- -5'
30908 3' -60.7 NC_006552.1 + 8137 0.7 0.257838
Target:  5'- cUGcGCCAGGUGGuCGC-GCAGUAucgcGGCCc -3'
miRNA:   3'- -ACcUGGUCCGCC-GCGuCGUCGU----UCGG- -5'
30908 3' -60.7 NC_006552.1 + 41403 0.7 0.251508
Target:  5'- gGGucaGCCAGGCaGCGCGcCAGUucGGCCg -3'
miRNA:   3'- aCC---UGGUCCGcCGCGUcGUCGu-UCGG- -5'
30908 3' -60.7 NC_006552.1 + 30653 0.7 0.245306
Target:  5'- uUGGAagucggccacCCAGGCGGUGUAGaugucgucgAGCGAuGCCg -3'
miRNA:   3'- -ACCU----------GGUCCGCCGCGUCg--------UCGUU-CGG- -5'
30908 3' -60.7 NC_006552.1 + 15019 0.7 0.245306
Target:  5'- cGGcGCCAGuggcuucagcacGCGGgGCugcGCAGCAGGCUg -3'
miRNA:   3'- aCC-UGGUC------------CGCCgCGu--CGUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 25293 0.7 0.244693
Target:  5'- aUGGACCGGGUagcggugucggucGGCGUccaagcugGGCGGguAGCg -3'
miRNA:   3'- -ACCUGGUCCG-------------CCGCG--------UCGUCguUCGg -5'
30908 3' -60.7 NC_006552.1 + 61966 0.71 0.233284
Target:  5'- -uGACCAGauccaaugcgccGCuGUGCAGCAGCGAGgCCg -3'
miRNA:   3'- acCUGGUC------------CGcCGCGUCGUCGUUC-GG- -5'
30908 3' -60.7 NC_006552.1 + 63680 0.71 0.227461
Target:  5'- aGGACCAGGCGcCGac---GCAAGCCg -3'
miRNA:   3'- aCCUGGUCCGCcGCgucguCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 40359 0.71 0.227461
Target:  5'- gUGGaACCAGaUGGCGCAGCcaucGCugcGGCCg -3'
miRNA:   3'- -ACC-UGGUCcGCCGCGUCGu---CGu--UCGG- -5'
30908 3' -60.7 NC_006552.1 + 56852 0.72 0.17577
Target:  5'- gGGAUUcGGCaGCGCcGCGGCGAGCg -3'
miRNA:   3'- aCCUGGuCCGcCGCGuCGUCGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.